Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P29209

Metabolite ID
P29209
Deionized mass
1012.3397 Da
Average m/z
1013.3512
Average RT
15.7249
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
72
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

72 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.04G096100 hypothetical protein AT1G58230:AT1G58230:binding protein 10Chr04:8566631–8625328 (+)7.128e-11
Glyma.04G096800 hypothetical protein AT4G24460:CLT2:CRT (chloroquine-resistance transporter)-like transporter 2 4Chr04:8747857–8778229 (-)4.531e-11
Glyma.04G095800 hypothetical protein AT4G24490:RGTA1:RAB geranylgeranyl transferase alpha subunit 1 3Chr04:8530865–8536783 (+)5.081e-12
Glyma.04G096300 hypothetical protein NA 3Chr04:8635554–8654734 (+)1.417e-12
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)4.954e-13
Glyma.03G251100 hypothetical protein AT3G04490:AT3G04490:exportin-4 protein 2Chr03:44673965–44702804 (-)4.322e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 2Chr05:32125404–32138244 (+)5.378e-19
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 2Chr05:32421116–32425198 (-)3.535e-17
Glyma.09G052400 hypothetical protein AT1G31040:AT1G31040:PLATZ transcription factor family protein 2Chr09:4583416–4589291 (-)4.534e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.069e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)5.791e-17
Glyma.03G250400 hypothetical protein AT3G04470:AT3G04470:Ankyrin repeat family protein 1Chr03:44616824–44621636 (-)5.314e-11
Glyma.04G095700 hypothetical protein AT1G09700:HYL1:dsRNA-binding domain-like superfamily protein 1Chr04:8521259–8525328 (+)6.575e-11
Glyma.04G096500 hypothetical protein NA 1Chr04:8664088–8675605 (+)4.531e-11
Glyma.04G096600 hypothetical protein AT1G58250:SAB:HYPERSENSITIVE TO PI STARVATION 4 1Chr04:8693806–8724007 (-)4.531e-11
Glyma.04G096900 hypothetical protein NA 1Chr04:8778953–8796458 (-)4.531e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)6.078e-11
Glyma.05G123300 hypothetical protein NA 1Chr05:31696132–31700404 (+)2.282e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.76e-16
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)9.671e-13
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)3.156e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.875e-17
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)5.727e-17
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)5.727e-17
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.752e-19
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)5.378e-19
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)5.378e-19
Glyma.05G130600 hypothetical protein AT1G30040:GA2OX2:gibberellin 2-oxidase 1Chr05:32352085–32354865 (+)2.289e-13
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)8.524e-14
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)6.832e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.302e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.183e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.097e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.05e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.677e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.677e-14
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)8.82e-11
Glyma.07G261600 hypothetical protein AT1G11820:AT1G11820:O-Glycosyl hydrolases family 17 protein 1Chr07:43658590–43662055 (+)5.174e-12
Glyma.07G262000 hypothetical protein AT1G62250:AT1G62250:orotidine 5'-phosphate decarboxylase 1Chr07:43679697–43682939 (-)5.174e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)3.294e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)4.195e-12
Glyma.09G050800 AAH2 AT4G20070:AAH:allantoate amidohydrolase 1Chr09:4413615–4418223 (-)1.992e-11
Glyma.09G051100 hypothetical protein NA 1Chr09:4454515–4461881 (+)4.492e-11
Glyma.09G051500 hypothetical protein AT3G06960:PDE320:pigment defective 320 1Chr09:4488096–4493102 (-)4.492e-11
Glyma.09G052100 hypothetical protein AT3G22230:AT3G22230:Ribosomal L27e protein family 1Chr09:4536612–4538089 (+)1.368e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)5.823e-14
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)4.943e-11
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)4.944e-11
Glyma.09G059600 hypothetical protein AT4G30010:AT4G30010:ATP-dependent RNA helicase 1Chr09:5504630–5507434 (+)3.096e-11
Glyma.09G059700 hypothetical protein AT4G29940:PRHA:pathosis related homeodomain protein A 1Chr09:5513108–5520158 (+)3.096e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)3.096e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)4.001e-11
Glyma.11G179000 hypothetical protein AT2G27230:LHW:transcription factor-like protein 1Chr11:24412040–24417199 (+)2.414e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)6.019e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)6.019e-13
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)6.18e-13
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)4.761e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)6.501e-16
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)9.015e-16
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)6.501e-16
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)6.502e-16
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.357e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)9.047e-14
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)5.554e-15
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)7.912e-11
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)7.912e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)8.65e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)6.426e-14
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)1.606e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.896e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.896e-11
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)1.151e-11