Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P29206

Metabolite ID
P29206
Deionized mass
626.2740 Da
Average m/z
627.2805
Average RT
15.7242
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
59
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

59 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)8.594e-11
Glyma.06G205100 hypothetical protein NA 2Chr06:19392099–19394901 (+)3.156e-11
Glyma.06G206000 hypothetical protein AT5G08110:AT5G08110:UBQ, helicase-c and DEAD-like helicase domain-containing protein 2Chr06:19693187–19711341 (-)4.573e-11
Glyma.06G209300 hypothetical protein NA 2Chr06:20573671–20581076 (-)3.869e-12
Glyma.08G184300 hypothetical protein NA 2Chr08:14784345–14786953 (+)2.265e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)3.195e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)1.881e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.019e-11
Glyma.06G204200 hypothetical protein AT5G08050:AT5G08050:wiskott-aldrich syndrome family protein, putative (DUF1118) 1Chr06:19170925–19173352 (+)5.409e-12
Glyma.06G205000 hypothetical protein AT5G60940:AT5G60940:Transducin/WD40 repeat-like superfamily protein 1Chr06:19370642–19375687 (-)3.156e-11
Glyma.06G205800 AP1A agamous-like MADS-box AT5G60910:AGL8:AGAMOUS-like 8 1Chr06:19583729–19590906 (+)4.573e-11
Glyma.06G207900 hypothetical protein NA 1Chr06:20278974–20282107 (-)1.22e-11
Glyma.06G208000 hypothetical protein AT1G74000:SS3:strictosidine synthase 3 1Chr06:20286288–20288769 (+)1.22e-11
Glyma.06G208900 hypothetical protein NA 1Chr06:20515068–20521900 (-)1.22e-11
Glyma.06G209400 hypothetical protein NA 1Chr06:20622369–20629712 (+)1.22e-11
Glyma.06G209600 hypothetical protein AT1G48960:AT1G48960:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:20638577–20641470 (+)1.22e-11
Glyma.06G210000 hypothetical protein NA 1Chr06:20706632–20708144 (-)1.22e-11
Glyma.06G210100 hypothetical protein NA 1Chr06:20725481–20728890 (-)1.22e-11
Glyma.06G210400 hypothetical protein AT1G03280:AT1G03280:Transcription factor TFIIE, alpha subunit 1Chr06:20768340–20778709 (-)1.22e-11
Glyma.06G210900 hypothetical protein AT3G24330:AT3G24330:O-Glycosyl hydrolases family 17 protein 1Chr06:20942818–20945744 (+)1.22e-11
Glyma.06G211500 hypothetical protein AT5G19950:AT5G19950:tudor domain protein (DUF1767) 1Chr06:21104409–21114116 (-)1.22e-11
Glyma.06G211700 hypothetical protein NA 1Chr06:21226061–21226529 (-)8.937e-12
Glyma.06G211800 hypothetical protein NA 1Chr06:21237649–21239875 (+)8.937e-12
Glyma.06G213600 hypothetical protein NA 1Chr06:21713618–21726865 (+)8.937e-12
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)3.728e-13
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.65e-12
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)3.728e-13
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)3.728e-13
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.65e-12
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)3.489e-11
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)9.214e-11
Glyma.08G109000 SUB1 NA 1Chr08:8364770–8373803 (-)8.997e-12
Glyma.08G109400 CHS1 AT5G13930:TT4:Chalcone and stilbene synthase family protein 1Chr08:8391364–8394840 (+)5.931e-11
Glyma.08G110000 hypothetical protein AT3G23840:AT3G23840:HXXXD-type acyl-transferase family protein 1Chr08:8438346–8442806 (-)8.997e-12
Glyma.08G113900 hypothetical protein AT3G13560:AT3G13560:O-Glycosyl hydrolases family 17 protein 1Chr08:8730526–8734718 (-)6.769e-11
Glyma.08G182000 hypothetical protein NA 1Chr08:14601875–14604750 (+)3.291e-11
Glyma.08G183500 SWEET24 sugar efflux transporter SWEET24 AT5G13170:SAG29:senescence-associated 29 1Chr08:14724384–14726579 (+)4.694e-11
Glyma.08G184000 hypothetical protein AT2G01080:AT2G01080:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr08:14749219–14752814 (-)1.563e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.345e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.345e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.345e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.345e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)7.706e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.507e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.235e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.235e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)3.195e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.039e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.056e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.04e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.039e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)7.299e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.387e-12
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)3.541e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)6.885e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)8.594e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)8.594e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.183e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)5.98e-13