Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P29176

Metabolite ID
P29176
Deionized mass
229.0881 Da
Average m/z
230.0960
Average RT
15.7169
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
78
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

78 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G147300 hypothetical protein NA 7Chr08:11238871–11242682 (+)1.994e-16
Glyma.01G036200 hypothetical protein AT1G10510:emb2004:RNI-like superfamily protein 3Chr01:3791180–3811591 (-)2.198e-12
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)4.465e-11
Glyma.01G036500 hypothetical protein AT1G59980:ARL2:ARG1-like 2__AT1G24120:ARL1:ARG1-like 1 2Chr01:3821377–3825854 (-)2.198e-12
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)5.625e-11
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)1.828e-11
Glyma.08G146100 hypothetical protein NA 2Chr08:11119305–11124078 (+)4.304e-13
Glyma.11G132500 hypothetical protein AT3G20870:AT3G20870:ZIP metal ion transporter family 2Chr11:10140512–10144780 (+)4.388e-11
Glyma.11G133300 hypothetical protein NA 2Chr11:10188790–10192565 (-)1.011e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)6.345e-12
Glyma.01G036300 hypothetical protein NA 1Chr01:3813757–3814433 (+)6.697e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)7.356e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)2.45e-11
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)4.941e-11
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)1.931e-11
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)1.931e-11
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)1.931e-11
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)1.931e-11
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)1.931e-11
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)1.931e-11
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)1.931e-11
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)5.625e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.359e-11
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)8.383e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.772e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)5.445e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)5.445e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)5.445e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)8.809e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.45e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.479e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.429e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.429e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.911e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 1Chr08:9065033–9071774 (-)7.512e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)7.512e-11
Glyma.08G146000 hypothetical protein AT5G09850:AT5G09850:Transcription elongation factor (TFIIS) family protein 1Chr08:11103557–11106499 (+)1.791e-11
Glyma.08G146200 hypothetical protein NA 1Chr08:11125789–11129806 (-)4.604e-11
Glyma.08G146300 hypothetical protein AT5G09820:AT5G09820:Plastid-lipid associated protein PAP / fibrillin family protein 1Chr08:11136129–11139057 (-)3.226e-11
Glyma.08G147200 hypothetical protein AT3G18710:PUB29:plant U-box 29__AT5G64660:CMPG2:CYS, MET, PRO, and GLY protein 2 1Chr08:11225587–11227445 (+)1.096e-16
Glyma.08G147400 hypothetical protein AT1G48870:AT1G48870:Transducin/WD40 repeat-like superfamily protein 1Chr08:11248804–11251957 (+)5.529e-16
Glyma.08G147500 hypothetical protein AT3G18680:AT3G18680:Amino acid kinase family protein 1Chr08:11253074–11256505 (+)3.969e-11
Glyma.08G182000 hypothetical protein NA 1Chr08:14601875–14604750 (+)5.06e-11
Glyma.08G183500 SWEET24 sugar efflux transporter SWEET24 AT5G13170:SAG29:senescence-associated 29 1Chr08:14724384–14726579 (+)7.456e-11
Glyma.08G183700 Fasciclin-like arabinogalactan protein 19 NA 1Chr08:14738283–14742033 (+)2.621e-11
Glyma.08G184000 hypothetical protein AT2G01080:AT2G01080:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr08:14749219–14752814 (-)5.288e-11
Glyma.08G184300 hypothetical protein NA 1Chr08:14784345–14786953 (+)1.347e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)1.421e-11
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)2.529e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)6.755e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)6.755e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)6.755e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)6.755e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)3.644e-12
Glyma.11G132700 hypothetical protein NA 1Chr11:10160457–10165565 (+)4.388e-11
Glyma.11G132900 hypothetical protein NA 1Chr11:10175214–10176574 (+)4.388e-11
Glyma.11G183800 hypothetical protein AT5G22450:AT5G22450:spectrin beta chain, brain 1Chr11:25162867–25173439 (-)4.54e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)5.719e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)5.719e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)6.644e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)6.644e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)6.835e-11
Glyma.15G049800 hypothetical protein NA 1Chr15:3927843–3933656 (-)3.085e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.272e-15
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.784e-15
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.272e-15
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.272e-15
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.956e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.632e-13
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)6.44e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.967e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)4.465e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)4.465e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)8.006e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)7.613e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)9.047e-14
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)7.691e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)7.691e-11