Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P29170

Metabolite ID
P29170
Deionized mass
929.4527 Da
Average m/z
930.4596
Average RT
15.7140
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
57
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

57 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 3Chr03:169480–172727 (+)5.872e-11
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)2.367e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)2.347e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)9.125e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)9.125e-11
Glyma.02G006500 hypothetical protein AT4G01660:ABC1:ABC transporter 1 1Chr02:693193–700260 (+)4.225e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)3.328e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.493e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)4.02e-13
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.056e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.743e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.743e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.282e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.112e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.112e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.112e-13
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)4.749e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)3.301e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)3.144e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.008e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.699e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.3e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.55e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.54e-14
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)1.373e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)9.456e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)3.828e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.899e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.899e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.899e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.899e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.639e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)9.093e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.188e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.188e-13
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.824e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)2.347e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.872e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.584e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.872e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.872e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.575e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.073e-14
Glyma.15G139000 hypothetical protein NA 1Chr15:11314329–11317181 (-)4.718e-11
Glyma.15G140400 hypothetical protein NA 1Chr15:11495189–11495691 (+)5.299e-11
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)8.207e-14
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)1.878e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.884e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)3.85e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)5.016e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)6.477e-13
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)8.257e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)5.28e-11
Glyma.17G189300 hypothetical protein NA 1Chr17:25644440–25649489 (-)9.098e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)2.07e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)9.736e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)3.966e-11