Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P29164

Metabolite ID
P29164
Deionized mass
462.1461 Da
Average m/z
463.1537
Average RT
15.7123
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
40
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

40 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 3Chr16:35831912–35835153 (+)3.59e-13
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)2.1e-11
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)9.055e-11
Glyma.17G217900 hypothetical protein NA 3Chr17:36771760–36778616 (-)6.106e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)2.983e-11
Glyma.18G240600 hypothetical protein AT2G40730:CTEXP:kinase family with ARM repeat domain-containing protein 2Chr18:52922157–52933250 (-)7.303e-11
Glyma.01G117000 hypothetical protein NA 1Chr01:40366281–40370122 (+)7.865e-11
Glyma.01G117200 hypothetical protein NA 1Chr01:40497525–40501709 (-)7.865e-11
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)8.075e-11
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)3.098e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.247e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)2.919e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.424e-16
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.124e-23
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.405e-33
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)1.304e-11
Glyma.09G057000 hypothetical protein NA 1Chr09:5140625–5145658 (+)4.233e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.493e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)6.068e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)3.933e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)3.933e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)3.933e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)3.933e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.034e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.354e-15
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)8.943e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 1Chr13:24677399–24693129 (-)8.562e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)8.562e-11
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)4.565e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.369e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)7.876e-12
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)6.529e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)9.055e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.422e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.422e-12
Glyma.17G218400 hypothetical protein NA 1Chr17:36900654–36906204 (+)6.649e-11
Glyma.18G044900 hypothetical protein AT1G66120:AAE11:AMP-dependent synthetase and ligase family protein__AT1G68270:AT1G68270:AMP-dependent synthetase and li… 1Chr18:3881382–3884162 (+)1.465e-11
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)8.078e-13
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)2.314e-12
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)7.291e-13