Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P29106

Metabolite ID
P29106
Deionized mass
972.4792 Da
Average m/z
973.4887
Average RT
15.6920
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
126
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

126 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)1.758e-13
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)1.376e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)5.436e-11
Glyma.06G209300 hypothetical protein NA 2Chr06:20573671–20581076 (-)1.008e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.281e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.281e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.58e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)8.988e-12
Glyma.15G140400 hypothetical protein NA 2Chr15:11495189–11495691 (+)9.521e-12
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)8.976e-13
Glyma.18G100200 hypothetical protein NA 2Chr18:10512806–10522231 (+)5.799e-12
Glyma.01G014800 hypothetical protein NA 1Chr01:1459585–1464612 (+)2.586e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)8.819e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)8.819e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.138e-11
Glyma.02G303600 hypothetical protein NA 1Chr02:47883626–47887124 (-)1.651e-11
Glyma.02G303700 hypothetical protein NA 1Chr02:47892900–47896207 (+)1.651e-11
Glyma.02G304000 hypothetical protein AT1G51350:AT1G51350:ARM repeat superfamily protein 1Chr02:47908136–47915999 (-)1.651e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)6.222e-12
Glyma.03G017800 hypothetical protein AT4G00770:TRM9:DUF4378 domain protein 1Chr03:1780719–1783735 (+)2.974e-12
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)2.375e-12
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)2.08e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)5.707e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.047e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)6.178e-11
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)7.547e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.449e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.665e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.665e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.665e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)7.971e-14
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)2.994e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.952e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.044e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.275e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.806e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.806e-13
Glyma.06G207900 hypothetical protein NA 1Chr06:20278974–20282107 (-)5.169e-11
Glyma.06G208000 hypothetical protein AT1G74000:SS3:strictosidine synthase 3 1Chr06:20286288–20288769 (+)5.169e-11
Glyma.06G208900 hypothetical protein NA 1Chr06:20515068–20521900 (-)5.169e-11
Glyma.06G209400 hypothetical protein NA 1Chr06:20622369–20629712 (+)5.169e-11
Glyma.06G209600 hypothetical protein AT1G48960:AT1G48960:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:20638577–20641470 (+)5.169e-11
Glyma.06G210000 hypothetical protein NA 1Chr06:20706632–20708144 (-)5.169e-11
Glyma.06G210100 hypothetical protein NA 1Chr06:20725481–20728890 (-)5.169e-11
Glyma.06G210400 hypothetical protein AT1G03280:AT1G03280:Transcription factor TFIIE, alpha subunit 1Chr06:20768340–20778709 (-)5.169e-11
Glyma.06G210900 hypothetical protein AT3G24330:AT3G24330:O-Glycosyl hydrolases family 17 protein 1Chr06:20942818–20945744 (+)5.169e-11
Glyma.06G211500 hypothetical protein AT5G19950:AT5G19950:tudor domain protein (DUF1767) 1Chr06:21104409–21114116 (-)5.169e-11
Glyma.06G211700 hypothetical protein NA 1Chr06:21226061–21226529 (-)6.912e-11
Glyma.06G211800 hypothetical protein NA 1Chr06:21237649–21239875 (+)6.912e-11
Glyma.06G213600 hypothetical protein NA 1Chr06:21713618–21726865 (+)6.912e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)1.154e-13
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)2.08e-13
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)1.154e-13
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)1.154e-13
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)2.08e-13
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)6.35e-12
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)7.828e-12
Glyma.06G293600 hypothetical protein AT1G03650:AT1G03650:Acyl-CoA N-acyltransferases (NAT) superfamily protein 1Chr06:48251255–48252791 (+)6.567e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)8.576e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)7.511e-15
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)1.623e-12
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)9.429e-11
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)9.43e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.069e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)6.47e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)1.559e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)6.113e-11
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)3.129e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)1.591e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)3.371e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)6.563e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.708e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.708e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.708e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.708e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.532e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.258e-12
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)1.405e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.434e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.434e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)8.089e-16
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)8.089e-16
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)7.517e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.818e-13
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)6.142e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)3.879e-15
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)3.879e-15
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)9.736e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 1Chr13:24677399–24693129 (-)9.082e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)9.082e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.281e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.281e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.015e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)5.927e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)3.692e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.066e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)8.988e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.193e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.287e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.193e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.193e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.89e-12
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)1.021e-11
Glyma.16G057400 hypothetical protein NA 1Chr16:5618869–5630701 (+)3.29e-11
Glyma.16G057500 hypothetical protein NA 1Chr16:5631176–5634867 (-)1.418e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)9.697e-14
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)1.376e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)1.376e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.156e-13
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.916e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)9.279e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.391e-12
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)6.24e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)8.734e-11
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)7.394e-11
Glyma.17G215200 hypothetical protein NA 1Chr17:36125880–36142936 (+)5.717e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)8.598e-13
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)5.799e-12
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)4.766e-12
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)5.799e-12
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)5.149e-14
Glyma.19G005800 Polyribonucleotide nucleotidyltransferase 2, mitochondrial AT5G14580:AT5G14580:polyribonucleotide nucleotidyltransferase 1Chr19:522587–531382 (-)9.063e-12
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)3.81e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.615e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.615e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)7.272e-11