Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P29092

Metabolite ID
P29092
Deionized mass
104.0247 Da
Average m/z
105.0316
Average RT
15.6879
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
59
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

59 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 3Chr04:7187985–7192897 (+)4.966e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.145e-11
Glyma.09G018700 hypothetical protein NA 2Chr09:1470411–1472672 (-)9.586e-13
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 2Chr12:3949453–3957386 (-)7.707e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)7.296e-15
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)7.296e-15
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)4.459e-11
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)2.175e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)8.905e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.349e-12
Glyma.03G022300 hypothetical protein AT3G60880:DHDPS1:dihydrodipicolinate synthase 1 1Chr03:2331191–2334210 (-)9.712e-11
Glyma.03G022500 hypothetical protein NA 1Chr03:2339702–2345448 (+)8.844e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.131e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.824e-11
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)8.251e-11
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)8.251e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)8.009e-11
Glyma.07G019900 hypothetical protein AT1G79870:AT1G79870:D-isomer specific 2-hydroxyacid dehydrogenase family protein 1Chr07:1561952–1564494 (+)7.456e-11
Glyma.07G087500 hypothetical protein AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr07:8093667–8100429 (+)6.197e-12
Glyma.07G087700 hypothetical protein AT3G24495:MSH7:MUTS homolog 7 1Chr07:8111751–8121053 (+)7.21e-13
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)7.373e-15
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)5.37e-16
Glyma.07G097000 hypothetical protein AT1G19670:CLH1:chlorophyllase 1 1Chr07:9118318–9120182 (-)7.073e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.145e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)4.145e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.145e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.145e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)9.621e-11
Glyma.09G019800 VAMP721D vesicle-associated membrane protein 721d NA 1Chr09:1540660–1547761 (+)1.287e-12
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)4.879e-11
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)6.903e-11
Glyma.11G061800 hypothetical protein NA 1Chr11:4632831–4633552 (+)8.611e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)8.652e-13
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)5.591e-12
Glyma.12G054500 hypothetical protein NA 1Chr12:3938604–3943724 (+)4.282e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)4.976e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)4.976e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)7.833e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.816e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)9.508e-12
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)1.178e-12
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)5.068e-11
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)5.068e-11
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)1.823e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.227e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.133e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)3.671e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)9.59e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.662e-15
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.662e-15
Glyma.18G073500 hypothetical protein AT3G44730:KP1:kinesin-like protein 1 1Chr18:6971929–6982758 (+)5.436e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)2.974e-11
Glyma.18G298800 hypothetical protein NA 1Chr18:57633577–57639546 (+)6.965e-11
Glyma.18G299500 hypothetical protein AT2G43160:AT2G43160:ENTH/VHS family protein 1Chr18:57741567–57749794 (+)1.7e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)6.441e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)6.441e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.498e-11
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)8.768e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.665e-16