Overview Annotation GWAS Evidence Associated genes

P28999

Metabolite ID
P28999
Deionized mass
1084.5445 Da
Average m/z
543.2750
Average RT
15.6597
Adduct
[M+2H]2+
Association scope
Overlapping genes only
Associated genes
15
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

15 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.02G198400 hypothetical protein AT3G11630:AT3G11630:Thioredoxin superfamily protein__AT5G06290:2-Cys Prx B:2-cysteine peroxiredoxin B 2Chr02:37991738–37995375 (-)5.206e-11
Glyma.02G198600 hypothetical protein NA 1Chr02:38037597–38038959 (-)5.206e-11
Glyma.02G198800 hypothetical protein AT5G47890:AT5G47890:NADH-ubiquinone oxidoreductase B8 subunit 1Chr02:38089199–38090280 (+)5.206e-11
Glyma.02G199000 hypothetical protein NA 1Chr02:38096406–38101699 (-)5.206e-11
Glyma.08G290000 hypothetical protein AT5G22210:AT5G22210:aspartyl/glutamyl-tRNA (Asn/Gln) amidotransferase subunit B 1Chr08:40309863–40312592 (-)6.445e-12
Glyma.08G290100 hypothetical protein AT5G08520:AT5G08520:Duplicated homeodomain-like superfamily protein 1Chr08:40318384–40327148 (+)6.445e-12
Glyma.08G290700 hypothetical protein AT3G11400:EIF3G1:eukaryotic translation initiation factor 3G1 1Chr08:40436892–40439186 (+)6.445e-12
Glyma.08G349900 hypothetical protein AT3G07170:AT3G07170:Sterile alpha motif (SAM) domain-containing protein__AT5G48680:AT5G48680:Sterile alpha motif (SAM) … 1Chr08:46397742–46402793 (+)1.301e-11
Glyma.08G353100 hypothetical protein NA 1Chr08:46633525–46637156 (+)1.301e-11
Glyma.08G353800 hypothetical protein AT2G21195:AT2G21195:uncharacterized protein 1Chr08:46674503–46677922 (+)1.301e-11
Glyma.08G355200 hypothetical protein NA 1Chr08:46783898–46786967 (-)1.301e-11
Glyma.08G355800 hypothetical protein AT5G48850:ATSDI1:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:46839052–46840921 (-)1.301e-11
Glyma.11G231700 hypothetical protein AT3G56040:UGP3:UDP-glucose pyrophosphorylase 3 1Chr11:32734340–32742549 (-)1.301e-11
Glyma.11G232500 hypothetical protein AT5G05470:EIF2 ALPHA:eukaryotic translation initiation factor 2 alpha subunit__AT2G40290:AT2G40290:Eukaryotic translati… 1Chr11:32786193–32790357 (-)1.301e-11
Glyma.11G232700 hypothetical protein NA 1Chr11:32811723–32819373 (-)1.301e-11