Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P28937

Metabolite ID
P28937
Deionized mass
174.0668 Da
Average m/z
175.0740
Average RT
15.6433
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
81
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

81 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.04G123500 hypothetical protein AT1G32750:HAF01:HAC13 protein (HAC13) 4Chr04:15945709–15987722 (+)1.74e-11
Glyma.04G139200 hypothetical protein AT5G40950:RPL27:ribosomal protein large subunit 27 4Chr04:22306503–22318344 (-)8.774e-11
Glyma.04G141400 hypothetical protein AT3G54500:AT3G54500:agglutinin-like protein 4Chr04:23750291–23774849 (+)8.774e-11
Glyma.04G146900 hypothetical protein NA 3Chr04:28661091–28689863 (+)1.249e-12
Glyma.04G124800 hypothetical protein NA 2Chr04:16368438–16390781 (+)1.74e-11
Glyma.04G129200 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 2Chr04:18028813–18036924 (-)1.74e-11
Glyma.04G129500 hypothetical protein AT3G21060:RBL:Transducin/WD40 repeat-like superfamily protein 2Chr04:18096368–18109438 (+)1.74e-11
Glyma.04G133800 THO complex subunit 1 AT5G09860:THO1:nuclear matrix protein-like protein 2Chr04:19112403–19151434 (-)8.774e-11
Glyma.04G141000 hypothetical protein AT3G61710:ATG6:AUTOPHAGY 6 2Chr04:23665626–23682229 (-)8.774e-11
Glyma.04G141600 hypothetical protein NA 2Chr04:23908115–23914216 (+)8.774e-11
Glyma.04G143000 hypothetical protein AT2G18730:DGK3:diacylglycerol kinase 3 2Chr04:25618725–25643608 (-)8.774e-11
Glyma.04G146000 hypothetical protein AT1G03280:AT1G03280:Transcription factor TFIIE, alpha subunit__AT4G20340:AT4G20340:Transcription factor TFIIE, alpha su… 2Chr04:27341995–27361620 (-)1.249e-12
Glyma.19G249900 hypothetical protein AT1G64790:ILA:ILITYHIA 2Chr19:49563974–49593306 (-)1.848e-11
Glyma.04G123100 hypothetical protein AT3G45900:AT3G45900:Ribonuclease P protein subunit P38-like protein 1Chr04:15850483–15855834 (-)1.74e-11
Glyma.04G123300 hypothetical protein AT1G11760:MED32:mediator of RNA polymerase II transcription subunit-like protein 1Chr04:15938623–15942113 (-)1.74e-11
Glyma.04G123600 hypothetical protein AT1G31810:AFH14:Formin Homology 14 1Chr04:15991005–16002616 (+)1.74e-11
Glyma.04G124300 hypothetical protein AT3G22170:FHY3:far-red elongated hypocotyls 3 1Chr04:16092707–16099713 (+)1.74e-11
Glyma.04G124400 hypothetical protein NA 1Chr04:16123330–16126794 (-)1.74e-11
Glyma.04G124600 hypothetical protein NA 1Chr04:16329983–16332898 (-)1.74e-11
Glyma.04G125100 hypothetical protein NA 1Chr04:16472994–16473578 (-)1.74e-11
Glyma.04G125300 hypothetical protein NA 1Chr04:16500908–16508912 (+)1.74e-11
Glyma.04G125600 hypothetical protein AT3G54360:AT3G54360:zinc ion binding protein 1Chr04:16622379–16634652 (-)1.74e-11
Glyma.04G126000 hypothetical protein NA 1Chr04:16811865–16817931 (-)1.74e-11
Glyma.04G127200 hypothetical protein NA 1Chr04:17136690–17142016 (+)1.74e-11
Glyma.04G127700 hypothetical protein NA 1Chr04:17503761–17506319 (-)1.74e-11
Glyma.04G128700 hypothetical protein NA 1Chr04:17902621–17908873 (-)1.74e-11
Glyma.04G128800 hypothetical protein AT2G27100:SE:C2H2 zinc-finger protein SERRATE (SE) 1Chr04:17927529–17936517 (-)1.74e-11
Glyma.04G129000 hypothetical protein AT5G04910:AT5G04910:DNA repair REX1-B protein 1Chr04:17964578–17969250 (-)1.74e-11
Glyma.04G129400 hypothetical protein NA 1Chr04:18080740–18086018 (-)1.74e-11
Glyma.04G129600 hypothetical protein NA 1Chr04:18110585–18112762 (+)1.74e-11
Glyma.04G130100 hypothetical protein NA 1Chr04:18193883–18196770 (-)1.74e-11
Glyma.04G130900 hypothetical protein AT5G04620:BIOF:biotin F 1Chr04:18371257–18385419 (+)1.74e-11
Glyma.04G131700 hypothetical protein AT2G14120:DRP3B:dynamin related protein 1Chr04:18600348–18610726 (+)1.74e-11
Glyma.04G135000 hypothetical protein AT3G12600:NUDT16:nudix hydrolase homolog 16 1Chr04:19650875–19668139 (-)8.774e-11
Glyma.04G135700 hypothetical protein AT1G08315:AT1G08315:ARM repeat superfamily protein 1Chr04:20177457–20178434 (-)8.774e-11
Glyma.04G137000 hypothetical protein NA 1Chr04:20600597–20613989 (-)8.774e-11
Glyma.04G138500 hypothetical protein NA 1Chr04:21541458–21545415 (+)8.774e-11
Glyma.04G138600 hypothetical protein NA 1Chr04:21670711–21673654 (-)8.774e-11
Glyma.04G139100 hypothetical protein NA 1Chr04:22051371–22055371 (-)8.774e-11
Glyma.04G139400 hypothetical protein NA 1Chr04:22479185–22483201 (+)8.774e-11
Glyma.04G139500 hypothetical protein NA 1Chr04:22491822–22493146 (-)8.774e-11
Glyma.04G139800 hypothetical protein NA 1Chr04:22603993–22605007 (+)8.774e-11
Glyma.04G139900 hypothetical protein AT1G63780:IMP4:Ribosomal RNA processing Brix domain protein 1Chr04:22700195–22706297 (-)8.774e-11
Glyma.04G140100 hypothetical protein NA 1Chr04:22819817–22823774 (-)8.774e-11
Glyma.04G140300 hypothetical protein NA 1Chr04:22898370–22900508 (-)8.774e-11
Glyma.04G140600 hypothetical protein NA 1Chr04:23055388–23057224 (+)8.774e-11
Glyma.04G140800 hypothetical protein NA 1Chr04:23277303–23282388 (+)8.774e-11
Glyma.04G141100 hypothetical protein NA 1Chr04:23690904–23694657 (+)8.774e-11
Glyma.04G141500 hypothetical protein AT3G54490:RPB5E:RNA polymerase II fifth largest subunit, E 1Chr04:23838512–23841401 (-)8.774e-11
Glyma.04G141900 hypothetical protein AT3G08550:KOB1:elongation defective 1 protein / ELD1 protein 1Chr04:24230301–24240069 (+)8.774e-11
Glyma.04G142000 hypothetical protein NA 1Chr04:24241273–24243457 (+)8.774e-11
Glyma.04G142100 hypothetical protein NA 1Chr04:24360758–24365093 (-)8.774e-11
Glyma.04G142500 hypothetical protein NA 1Chr04:24913798–24918829 (-)8.774e-11
Glyma.04G142700 hypothetical protein NA 1Chr04:24964360–24969309 (+)8.774e-11
Glyma.04G142900 hypothetical protein NA 1Chr04:25358105–25360352 (+)8.774e-11
Glyma.04G143100 hypothetical protein NA 1Chr04:25755954–25758051 (+)8.774e-11
Glyma.04G144500 hypothetical protein NA 1Chr04:26358080–26361040 (+)8.774e-11
Glyma.04G144600 hypothetical protein AT5G23050:AAE17:acyl-activating enzyme 17 1Chr04:26365321–26376843 (-)8.774e-11
Glyma.04G147300 hypothetical protein NA 1Chr04:29506460–29508527 (-)8.774e-11
Glyma.04G147500 hypothetical protein NA 1Chr04:29675584–29678457 (+)8.774e-11
Glyma.04G148800 hypothetical protein NA 1Chr04:31131095–31135159 (+)8.774e-11
Glyma.04G162400 hypothetical protein AT5G61010:EXO70E2:exocyst subunit exo70 family protein E2 1Chr04:40236981–40239376 (+)8.774e-11
Glyma.04G163600 hypothetical protein AT5G07940:AT5G07940:dentin sialophosphoprotein-like protein 1Chr04:40582252–40596618 (+)8.774e-11
Glyma.04G163700 hypothetical protein NA 1Chr04:40706246–40708923 (+)8.774e-11
Glyma.04G164100 hypothetical protein AT5G07910:AT5G07910:Leucine-rich repeat (LRR) family protein 1Chr04:40811977–40820483 (+)8.774e-11
Glyma.04G164600 hypothetical protein NA 1Chr04:41086167–41089544 (+)8.774e-11
Glyma.04G198900 hypothetical protein AT5G50810:TIM8:translocase inner membrane subunit 8 1Chr04:47113595–47117335 (-)5.462e-12
Glyma.04G199100 hypothetical protein NA 1Chr04:47129399–47131433 (+)2.001e-13
Glyma.04G199200 hypothetical protein AT5G50870:UBC27:ubiquitin-conjugating enzyme 27 1Chr04:47137301–47140936 (+)5.462e-12
Glyma.07G059800 hypothetical protein AT3G25530:GLYR1:glyoxylate reductase 1 1Chr07:5326726–5333569 (+)1.19e-15
Glyma.07G060400 hypothetical protein AT2G46270:GBF3:G-box binding factor 3 1Chr07:5358317–5363410 (-)1.19e-15
Glyma.07G060500 hypothetical protein AT4G01130:AT4G01130:GDSL-like Lipase/Acylhydrolase superfamily protein 1Chr07:5378706–5383359 (+)1.19e-15
Glyma.07G060600 hypothetical protein AT4G01140:AT4G01140:transmembrane protein, putative (DUF1191) 1Chr07:5383913–5385579 (-)1.19e-15
Glyma.07G061000 hypothetical protein AT2G46260:LRB1:BTB/POZ/Kelch-associated protein 1Chr07:5402093–5406758 (-)1.19e-15
Glyma.11G222100 hypothetical protein AT2G44920:AT2G44920:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr11:31731779–31738604 (-)2.886e-11
Glyma.13G263400 hypothetical protein AT1G17160:AT1G17160:pfkB-like carbohydrate kinase family protein 1Chr13:36671175–36675044 (+)1.19e-15
Glyma.16G008700 hypothetical protein AT1G17420:LOX3:lipoxygenase 3 1Chr16:735622–742337 (-)2.807e-11
Glyma.17G085500 hypothetical protein NA 1Chr17:6589337–6601346 (+)6.955e-11
Glyma.19G093000 hypothetical protein NA 1Chr19:32977613–32981935 (+)8.938e-14
Glyma.19G094000 hypothetical protein NA 1Chr19:33201223–33204882 (-)8.938e-14
Glyma.19G249800 hypothetical protein NA 1Chr19:49556301–49560270 (-)1.848e-11