Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P28917

Metabolite ID
P28917
Deionized mass
453.2184 Da
Average m/z
454.2251
Average RT
15.6356
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
39
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

39 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)1.921e-12
Glyma.06G260300 hypothetical protein AT1G60730:AT1G60730:NAD(P)-linked oxidoreductase superfamily protein 2Chr06:44535490–44539648 (-)4.307e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)8.333e-14
Glyma.19G128100 hypothetical protein NA 2Chr19:38728037–38732422 (+)8.726e-12
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)6.319e-11
Glyma.01G230400 hypothetical protein AT2G40935:AT2G40935:PLAC8 family protein 1Chr01:55782953–55786502 (+)1.097e-11
Glyma.01G231400 hypothetical protein AT4G25340:FKBP53:FK506 BINDING PROTEIN 53 1Chr01:55836387–55840615 (+)8.879e-11
Glyma.03G008300 hypothetical protein AT4G00400:GPAT8:glycerol-3-phosphate acyltransferase 8 1Chr03:801855–806650 (-)1.849e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.917e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.169e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.708e-20
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.327e-16
Glyma.06G260200 hypothetical protein AT1G60690:AT1G60690:NAD(P)-linked oxidoreductase superfamily protein__AT1G60710:ATB2:NAD(P)-linked oxidoreductase super… 1Chr06:44529441–44533552 (-)4.307e-12
Glyma.06G260500 hypothetical protein NA 1Chr06:44554415–44557883 (+)5.962e-15
Glyma.06G260600 hypothetical protein NA 1Chr06:44581412–44582859 (-)8.057e-11
Glyma.06G260700 hypothetical protein AT5G54520:AT5G54520:Transducin/WD40 repeat-like superfamily protein 1Chr06:44607544–44617916 (+)8.057e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)1.31e-13
Glyma.08G148500 hypothetical protein AT3G19860:bHLH121:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:11362991–11368184 (-)7.159e-12
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)1.178e-11
Glyma.09G231600 hypothetical protein AT1G71692:AGL12:AGAMOUS-like 12 1Chr09:45485256–45489213 (+)8.504e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)3.656e-12
Glyma.11G183200 hypothetical protein AT2G27500:AT2G27500:Glycosyl hydrolase superfamily protein 1Chr11:25070908–25075185 (-)1.003e-11
Glyma.11G183800 hypothetical protein AT5G22450:AT5G22450:spectrin beta chain, brain 1Chr11:25162867–25173439 (-)8.161e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)6.945e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)9.623e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)6.783e-12
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)7.097e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.598e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.598e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)6.239e-12
Glyma.18G263300 hypothetical protein AT5G39420:cdc2cAt:CDC2C 1Chr18:54865827–54872924 (-)3.388e-12
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)7.96e-13
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)1.77e-14
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)8.333e-14
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 1Chr19:1148510–1149495 (+)2.043e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)9.043e-16
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)9.043e-16
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)2.811e-12
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)2.446e-13