Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P28915

Metabolite ID
P28915
Deionized mass
274.0750 Da
Average m/z
275.0800
Average RT
15.6351
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
61
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

61 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.15G192700 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 3Chr15:21029024–21058079 (-)2.181e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 3Chr18:47102746–47129707 (+)2.081e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.155e-12
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)5.59e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)4.455e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)6.838e-13
Glyma.01G017900 hypothetical protein NA 1Chr01:1734474–1735545 (+)7.935e-11
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)6.907e-11
Glyma.02G293100 hypothetical protein AT3G20800:AT3G20800:Cell differentiation, Rcd1-like protein 1Chr02:47183443–47188007 (-)2.805e-11
Glyma.02G296300 hypothetical protein AT5G55400:AT5G55400:Actin binding Calponin homology (CH) domain-containing protein 1Chr02:47399263–47406220 (-)5.461e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)5.048e-13
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)4.884e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.319e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)2.146e-13
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)2.146e-13
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)2.146e-13
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)5.464e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)1.875e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.155e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)4.155e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.155e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.155e-12
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)5.091e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)5.091e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)9.665e-13
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)3.607e-11
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)5.058e-13
Glyma.09G252000 hypothetical protein AT2G40730:CTEXP:kinase family with ARM repeat domain-containing protein 1Chr09:47233101–47242848 (+)4.264e-11
Glyma.09G252300 hypothetical protein AT5G16520:AT5G16520:uncharacterized protein 1Chr09:47254519–47261787 (-)4.264e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.403e-11
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)4.017e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.673e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.673e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.894e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)1.692e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)5.435e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)4.456e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)6.838e-13
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.41e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.705e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.41e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.41e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.892e-11
Glyma.15G192400 hypothetical protein AT5G49150:GEX2:gamete expressed 2 1Chr15:20964449–20974340 (+)2.181e-11
Glyma.15G192900 hypothetical protein NA 1Chr15:21108370–21110353 (+)2.181e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)8.285e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)2.777e-11
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)7.364e-12
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)1.408e-13
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.6e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)9.393e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)9.262e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)9.262e-11
Glyma.18G194900 hypothetical protein NA 1Chr18:46855096–46855729 (+)2.125e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)2.939e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)5.885e-13
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)2.265e-12
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)1.121e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)4.888e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)5.257e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.439e-13