Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P28666

Metabolite ID
P28666
Deionized mass
840.3304 Da
Average m/z
841.3421
Average RT
15.5550
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
124
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

124 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 5Chr16:36856833–36863994 (-)2.969e-14
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)2.639e-13
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 3Chr20:34984922–34988496 (+)2.112e-15
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.452e-12
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)2.367e-12
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)2.367e-12
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)2.367e-12
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)7.059e-11
Glyma.13G051000 hypothetical protein AT1G19920:APS2:Pseudouridine synthase/archaeosine transglycosylase-like family protein 2Chr13:14742455–14747878 (-)2.684e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)4.58e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.377e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.377e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)7.747e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.403e-12
Glyma.03G081100 hypothetical protein NA 1Chr03:21841282–21846130 (+)4.979e-11
Glyma.03G202700 hypothetical protein AT5G16280:AT5G16280:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr03:41108071–41128352 (+)4.39e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)3.13e-19
Glyma.04G014300 hypothetical protein AT1G20880:AT1G20880:RNA-binding (RRM/RBD/RNP motifs) family protein 1Chr04:1101709–1106543 (+)3.619e-11
Glyma.04G014600 hypothetical protein NA 1Chr04:1119108–1123175 (+)3.619e-11
Glyma.04G015500 hypothetical protein AT2G33670:MLO5:Seven transmembrane MLO family protein 1Chr04:1176657–1181234 (-)6.56e-12
Glyma.04G018000 hypothetical protein AT5G42310:AT5G42310:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr04:1402993–1407323 (-)2.777e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)4.603e-13
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)5.502e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)5.502e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)5.502e-12
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)3.573e-15
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)3.573e-15
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)2.658e-11
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)2.658e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)2.639e-13
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)2.639e-13
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)2.508e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)2.508e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)1.098e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.077e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.452e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.452e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.452e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.452e-12
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)4.707e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)4.815e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)3.236e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)3.236e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.937e-12
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)5.056e-11
Glyma.09G011600 hypothetical protein NA 1Chr09:891635–893300 (+)1.666e-11
Glyma.09G011700 hypothetical protein NA 1Chr09:894858–897607 (-)1.632e-13
Glyma.09G012200 hypothetical protein AT2G35760:AT2G35760:Uncharacterized protein family (UPF0497) 1Chr09:937048–940244 (+)3.732e-13
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)3.715e-15
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)2.415e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)1.289e-11
Glyma.09G133800 hypothetical protein NA 1Chr09:33268295–33269240 (+)3.64e-11
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)9.644e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)1.634e-13
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)1.634e-13
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)3.315e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)1.303e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)3.346e-12
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)8.656e-13
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)2.367e-12
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)2.367e-12
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)2.367e-12
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)2.367e-12
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)2.367e-12
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)1.341e-11
Glyma.10G037300 hypothetical protein AT3G54670:TTN8:Structural maintenance of chromosomes (SMC) family protein 1Chr10:3270545–3283318 (-)2.019e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.715e-11
Glyma.11G094700 hypothetical protein AT5G08280:HEMC:hydroxymethylbilane synthase 1Chr11:7190632–7195838 (-)2.293e-11
Glyma.11G095000 hypothetical protein NA 1Chr11:7206492–7209711 (-)1.884e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)2.508e-13
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)6.368e-13
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.264e-13
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.264e-13
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.264e-13
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)7.477e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)7.477e-12
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)1.53e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)3.081e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)3.081e-11
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)5.198e-13
Glyma.13G049200 hypothetical protein AT3G02440:TBL20:TRICHOME BIREFRINGENCE-LIKE 20 1Chr13:14515169–14519326 (-)4.528e-11
Glyma.13G049400 hypothetical protein AT2G20000:HBT:CDC27 family protein 1Chr13:14530308–14541307 (-)4.528e-11
Glyma.13G052100 hypothetical protein NA 1Chr13:14902730–14924713 (-)9.021e-12
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)2.746e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)7.514e-11
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)5.619e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)5.619e-11
Glyma.14G197700 hypothetical protein AT5G58470:TAF15b:TBP-associated factor 15B 1Chr14:46291986–46298337 (+)2.264e-11
Glyma.14G198000 hypothetical protein NA 1Chr14:46334117–46336863 (+)2.264e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)4.58e-12
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)5.246e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)5.322e-11
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)7.444e-11
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)7.444e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.084e-16
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)9.364e-14
Glyma.15G152900 hypothetical protein AT4G15755:AT4G15755:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr15:12680146–12681864 (-)2.02e-11
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)1.649e-11
Glyma.16G020900 hypothetical protein NA 1Chr16:1932165–1935289 (-)6.84e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)6.243e-12
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)6.243e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)2.052e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)3.954e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)2.549e-13
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)7.028e-12
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)9.532e-11
Glyma.17G004500 hypothetical protein AT5G47800:AT5G47800:Phototropic-responsive NPH3 family protein 1Chr17:444580–451107 (-)1.89e-11
Glyma.17G005900 hypothetical protein AT4G17215:AT4G17215:Pollen Ole e 1 allergen and extensin family protein__AT2G40113:AT2G40113:Pollen Ole e 1 allergen an… 1Chr17:546212–548525 (+)1.89e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.377e-14
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.377e-14
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)3.409e-12
Glyma.18G236700 hypothetical protein AT3G61490:AT3G61490:Pectin lyase-like superfamily protein 1Chr18:52558809–52562720 (+)3.302e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)3.09e-12
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)9.311e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)9.298e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)9.298e-11
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)9.637e-13
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)4.777e-14
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)7.124e-13
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)7.235e-12
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)6.893e-13
Glyma.20G106400 hypothetical protein AT5G23590:AT5G23590:DNAJ heat shock N-terminal domain-containing protein 1Chr20:34888699–34893605 (-)8.13e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)1.723e-13
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)9.111e-14