Overview Annotation GWAS Evidence Associated genes

P28662

Metabolite ID
P28662
Deionized mass
480.1639 Da
Average m/z
481.1716
Average RT
15.5543
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
12
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

12 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 2Chr11:9667918–9671917 (-)1.281e-13
Glyma.15G140400 hypothetical protein NA 2Chr15:11495189–11495691 (+)5.665e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.497e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.173e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)7.689e-11
Glyma.11G126800 hypothetical protein AT1G06050:AT1G06050:ENHANCED DISEASE RESISTANCE-like protein (DUF1336) 1Chr11:9647447–9649369 (+)2.145e-16
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)2.002e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)2.002e-11
Glyma.13G055200 hypothetical protein AT3G02200:AT3G02200:Proteasome component (PCI) domain protein 1Chr13:15229290–15234025 (-)1.856e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)5.201e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)5.201e-11
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)7.712e-13