Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P28629

Metabolite ID
P28629
Deionized mass
417.1568 Da
Average m/z
418.1609
Average RT
15.5462
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
42
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

42 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)1.496e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)5.82e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)5.82e-12
Glyma.03G016900 hypothetical protein NA 1Chr03:1702419–1707451 (+)3.357e-12
Glyma.03G017000 hypothetical protein AT3G61060:PP2-A13:phloem protein 2-A13 1Chr03:1716204–1719596 (+)2.252e-11
Glyma.03G017500 hypothetical protein NA 1Chr03:1761083–1762800 (+)9.827e-11
Glyma.03G020800 hypothetical protein AT3G61050:NTMC2T4:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr03:2124895–2135692 (-)1.603e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.276e-16
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)7.757e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.412e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.809e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.595e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.595e-12
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)4.139e-13
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)7.237e-12
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)3.868e-12
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)9.043e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)9.168e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)9.168e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)9.168e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)9.168e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)4.913e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)9.232e-12
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)1.715e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)1.423e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)9.588e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)9.5e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)7.768e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.517e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)3.864e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)3.864e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)6.786e-14
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)6.786e-14
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)9.425e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)1.418e-11
Glyma.18G264000 hypothetical protein AT3G29270:AT3G29270:RING/U-box superfamily protein 1Chr18:54933280–54938718 (+)5.212e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)1.846e-12
Glyma.18G267500 hypothetical protein NA 1Chr18:55179516–55181798 (-)1.1e-12
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)3.669e-11
Glyma.19G119200 hypothetical protein AT3G03630:CS26:cysteine synthase 26 1Chr19:37677773–37683394 (+)1.038e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)2.258e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.184e-11