Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P28616

Metabolite ID
P28616
Deionized mass
496.7081 Da
Average m/z
497.7138
Average RT
15.5419
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
48
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

48 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)5.126e-13
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 2Chr03:5113019–5121557 (+)4.638e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)7.752e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)1.391e-12
Glyma.02G113000 hypothetical protein AT1G69370:CM3:chorismate mutase 3 1Chr02:10939096–10941983 (-)1.09e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.042e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.717e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)9.433e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)9.433e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)9.433e-13
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)1.714e-11
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)4.86e-12
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)4.86e-12
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)2.567e-12
Glyma.08G148500 hypothetical protein AT3G19860:bHLH121:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:11362991–11368184 (-)2.95e-11
Glyma.08G159200 hypothetical protein NA 1Chr08:12346454–12350084 (+)1.938e-11
Glyma.08G159600 Mannosyltransferase family protein AT5G22130:PNT1:mannosyltransferase family protein 1Chr08:12377775–12387293 (-)5.139e-11
Glyma.08G159800 hypothetical protein AT1G72370:P40:40s ribosomal protein SA 1Chr08:12386775–12390398 (+)5.139e-11
Glyma.11G183200 hypothetical protein AT2G27500:AT2G27500:Glycosyl hydrolase superfamily protein 1Chr11:25070908–25075185 (-)1.86e-11
Glyma.15G107800 hypothetical protein AT1G64570:DUO3:Homeodomain-like superfamily protein 1Chr15:8473049–8483746 (+)5.569e-12
Glyma.15G110200 hypothetical protein NA 1Chr15:8634006–8639001 (-)2.901e-11
Glyma.15G111000 hypothetical protein AT1G62305:AT1G62305:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein__AT1G11940:AT1G11940:Cor… 1Chr15:8692505–8697919 (-)5.04e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.363e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.363e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.363e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)8.266e-13
Glyma.15G262100 hypothetical protein AT1G79550:PGK:phosphoglycerate kinase 1Chr15:49447943–49451741 (+)1.087e-11
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)8.745e-12
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)6.899e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)3.786e-13
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)8.584e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)3.917e-13
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)8.858e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)1.991e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)1.991e-12
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)1.332e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)4e-18
Glyma.16G189200 hypothetical protein AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein 1Chr16:35177846–35179798 (+)4.299e-12
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)6.672e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)6.723e-11
Glyma.17G258200 GASA29 gibberellin-regulated protein 29 NA 1Chr17:41222782–41223797 (-)1.534e-11
Glyma.18G242900 hypothetical protein NA 1Chr18:53113341–53119592 (-)7.733e-12
Glyma.18G262800 hypothetical protein NA 1Chr18:54832649–54833890 (+)3.151e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)5.34e-12
Glyma.19G194300 Dt1 AT5G03840:TFL1:PEBP (phosphatidylethanolamine-binding protein) family protein 1Chr19:45183357–45185175 (-)5.299e-11
Glyma.19G194500 hypothetical protein AT2G36270:ABI5:Basic-leucine zipper (bZIP) transcription factor family protein 1Chr19:45201612–45206816 (+)5.299e-11
Glyma.19G194800 hypothetical protein AT2G36250:FTSZ2-1:Tubulin/FtsZ family protein 1Chr19:45215929–45223182 (+)5.299e-11
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)3.985e-12