Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P28510

Metabolite ID
P28510
Deionized mass
770.3460 Da
Average m/z
771.3528
Average RT
15.5193
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
78
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

78 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.511e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)7.573e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.171e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)1.522e-12
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)6.742e-11
Glyma.01G034300 hypothetical protein NA 1Chr01:3573149–3579461 (-)2.921e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)6.714e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)3.473e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.533e-15
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.722e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)9.347e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)4.175e-13
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)4.175e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.595e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.081e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.081e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.081e-13
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)9.389e-13
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.933e-14
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)7.559e-18
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)3.515e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)6.942e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.688e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.409e-14
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.057e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.057e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)4.545e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)4.545e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)4.545e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.511e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.511e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)7.573e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)7.573e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)7.573e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)7.573e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)8.457e-11
Glyma.09G018700 hypothetical protein NA 1Chr09:1470411–1472672 (-)6.092e-15
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)4.393e-11
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)1.285e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)3.249e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)1.23e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)1.23e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)1.23e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)1.23e-11
Glyma.11G090300 hypothetical protein AT4G19190:AT4G19190:zinc knuckle (CCHC-type) family protein 1Chr11:6849007–6855564 (+)4.577e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.415e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.415e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.869e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.869e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.467e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.467e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)2.131e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)2.947e-12
Glyma.14G087900 hypothetical protein NA 1Chr14:7887761–7897469 (+)5.71e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)5.516e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.354e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)5.516e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)5.516e-13
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)6.389e-13
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)9.761e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)4.294e-18
Glyma.16G140000 hypothetical protein AT5G01820:SR1:serine/threonine protein kinase 1 1Chr16:29738375–29739010 (+)6.469e-11
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)3.367e-12
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)6.693e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)6.693e-12
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)7.718e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)5.218e-11
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)6.17e-12
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)6.17e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)6.236e-11
Glyma.16G207800 hypothetical protein AT4G15093:LigB:catalytic LigB subunit of aromatic ring-opening dioxygenase family 1Chr16:36750028–36751833 (-)8.26e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)2.567e-11
Glyma.16G208100 hypothetical protein AT5G23530:CXE18:carboxyesterase 18 1Chr16:36776806–36778169 (+)2.451e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)6.966e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.641e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.641e-11
Glyma.17G257100 hypothetical protein AT1G75660:XRN3:5'-3' exoribonuclease 3 1Chr17:41113121–41125026 (+)7.741e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)9.174e-11