Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P28497

Metabolite ID
P28497
Deionized mass
519.1127 Da
Average m/z
520.1158
Average RT
15.5158
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
28
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

28 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.17G217300 hypothetical protein AT2G25170:PKL:chromatin remodeling factor CHD3 (PICKLE) 6Chr17:36638143–36669455 (-)1.397e-11
Glyma.17G217900 hypothetical protein NA 3Chr17:36771760–36778616 (-)7.36e-14
Glyma.10G038400 hypothetical protein NA 2Chr10:3400759–3409406 (+)1.745e-14
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.617e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.617e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)2.311e-13
Glyma.17G217200 hypothetical protein AT4G31910:BAT1:HXXXD-type acyl-transferase family protein 2Chr17:36624152–36630712 (-)1.397e-11
Glyma.17G217600 hypothetical protein NA 2Chr17:36695797–36698982 (-)1.397e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)9.14e-12
Glyma.06G179700 hypothetical protein NA 1Chr06:15251697–15254021 (-)6.957e-11
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)4.086e-12
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)3.326e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)3.326e-11
Glyma.09G281400 hypothetical protein AT3G18620:AT3G18620:DHHC-type zinc finger family protein 1Chr09:49668985–49676216 (-)2.502e-11
Glyma.09G281700 hypothetical protein NA 1Chr09:49705303–49733182 (-)2.502e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)8.039e-14
Glyma.10G038200 hypothetical protein NA 1Chr10:3394443–3395342 (-)2.121e-12
Glyma.10G038600 hypothetical protein AT4G28540:CKL6:casein kinase I-like 6 1Chr10:3423991–3432355 (+)4.805e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)5.821e-11
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)7.039e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)8.038e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)8.038e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.617e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)3.193e-12
Glyma.17G217000 hypothetical protein NA 1Chr17:36553695–36556013 (+)1.397e-11
Glyma.17G217100 hypothetical protein NA 1Chr17:36599289–36605544 (+)1.397e-11
Glyma.17G217800 hypothetical protein NA 1Chr17:36740653–36743352 (-)1.397e-11
Glyma.17G218400 hypothetical protein NA 1Chr17:36900654–36906204 (+)9.077e-13