Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P28455

Metabolite ID
P28455
Deionized mass
853.2794 Da
Average m/z
854.2819
Average RT
15.5038
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
90
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

90 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G166400 hypothetical protein AT4G36080:AT4G36080:phosphotransferases/inositol or phosphatidylinositol kinase 4Chr01:50404781–50436297 (-)1.434e-12
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)2.024e-13
Glyma.05G164700 hypothetical protein NA 2Chr05:35543931–35549196 (-)1.992e-13
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)4.802e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)1.537e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)4.038e-15
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)4.039e-15
Glyma.13G198600 hypothetical protein AT3G07940:AT3G07940:Calcium-dependent ARF-type GTPase activating protein family 2Chr13:31233913–31240731 (-)2.654e-11
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)1.067e-11
Glyma.01G166300 hypothetical protein AT3G51230:AT3G51230:chalcone-flavanone isomerase family protein 1Chr01:50402188–50404181 (+)1.434e-12
Glyma.01G166600 hypothetical protein AT2G18000:TAF14:TBP-associated factor 14 1Chr01:50443699–50446896 (-)1.434e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.56e-16
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.56e-16
Glyma.01G175500 hypothetical protein AT3G50660:DWF4:Cytochrome P450 superfamily protein 1Chr01:51219681–51224948 (+)2.754e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.467e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.469e-13
Glyma.03G046000 hypothetical protein AT1G58170:AT1G58170:Disease resistance-responsive (dirigent-like protein) family protein 1Chr03:5848597–5849782 (-)2.873e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)7.729e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)3.764e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)6.906e-11
Glyma.05G029700 hypothetical protein NA 1Chr05:2547452–2549487 (+)7.26e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)4.993e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)4.655e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)4.655e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.759e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)9.863e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)9.863e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)9.863e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.055e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)9.992e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)9.536e-15
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)6.099e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)6.099e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)6.099e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)5.896e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.395e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.395e-11
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)6.435e-11
Glyma.06G201700 hypothetical protein NA 1Chr06:18577883–18617874 (+)1.265e-11
Glyma.06G209300 hypothetical protein NA 1Chr06:20573671–20581076 (-)9.605e-11
Glyma.06G260900 hypothetical protein NA 1Chr06:44662225–44665728 (-)2.526e-14
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)2.788e-14
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)6.675e-12
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)5.338e-13
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)5.696e-12
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)5.696e-12
Glyma.08G112600 hypothetical protein NA 1Chr08:8660670–8663379 (-)7.472e-11
Glyma.08G112700 hypothetical protein NA 1Chr08:8661027–8661191 (+)7.472e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)5.473e-12
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)3.707e-11
Glyma.08G115700 hypothetical protein AT1G29120:AT1G29120:Hydrolase-like protein family 1Chr08:8868075–8876513 (+)4.143e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.275e-12
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)8.199e-13
Glyma.09G062200 hypothetical protein AT2G19350:AT2G19350:transmembrane protein (DUF872) 1Chr09:5901280–5902349 (+)4.134e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)5.125e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)8.115e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)8.713e-11
Glyma.11G094700 hypothetical protein AT5G08280:HEMC:hydroxymethylbilane synthase 1Chr11:7190632–7195838 (-)4.38e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)2.977e-12
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)9.004e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.506e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.506e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.35e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.35e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)8.495e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)7.014e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)7.014e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)5.299e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)5.299e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.537e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.386e-14
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.386e-14
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.038e-15
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)9.492e-12
Glyma.13G163400 hypothetical protein AT5G20350:TIP1:Ankyrin repeat family protein with DHHC zinc finger domain-containing protein 1Chr13:27861309–27869162 (+)8.066e-12
Glyma.13G198800 hypothetical protein NA 1Chr13:31252110–31257733 (-)2.654e-11
Glyma.13G332600 hypothetical protein AT5G59750:RIBA3:monofunctional riboflavin biosynthesis protein RIBA 3 1Chr13:42684855–42687548 (+)8.808e-11
Glyma.13G333500 hypothetical protein AT3G46060:RABE1c:RAB GTPase homolog 8A 1Chr13:42756166–42759962 (-)2.862e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)4.792e-12
Glyma.14G082300 hypothetical protein AT5G42750:BKI1:BRI1 kinase inhibitor 1 1Chr14:7130733–7132305 (+)1.826e-12
Glyma.14G191400 hypothetical protein NA 1Chr14:45610980–45612600 (+)3.171e-11
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)4.381e-14
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)1.068e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)8.151e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)1.865e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)1.865e-11
Glyma.17G258400 hypothetical protein AT1G30755:AT1G30755:elongation factor G, putative (DUF668) 1Chr17:41248979–41254225 (+)1.742e-11
Glyma.18G025700 hypothetical protein AT3G11110:AT3G11110:RING/U-box superfamily protein 1Chr18:1911249–1912730 (+)1.545e-13
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)3.813e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)5.388e-12