Overview Annotation GWAS Evidence Associated genes

P28434

Metabolite ID
P28434
Deionized mass
290.1834 Da
Average m/z
291.1921
Average RT
15.4968
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
152
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

152 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)4.37e-14
Glyma.06G201700 hypothetical protein NA 3Chr06:18577883–18617874 (+)1.164e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)8.508e-13
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)3.451e-12
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)6.959e-14
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 2Chr03:2007617–2009871 (+)1.351e-17
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)5.481e-17
Glyma.03G251100 hypothetical protein AT3G04490:AT3G04490:exportin-4 protein 2Chr03:44673965–44702804 (-)9.109e-11
Glyma.04G064500 hypothetical protein NA 2Chr04:5367346–5372857 (+)8.555e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 2Chr05:32125404–32138244 (+)2.076e-15
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 2Chr05:32421116–32425198 (-)4.153e-17
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)1.896e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.348e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.348e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)6.792e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)3.451e-12
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)3.441e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)2.344e-14
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)6.076e-13
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)2.704e-13
Glyma.01G030500 hypothetical protein NA 1Chr01:3189212–3200277 (+)8.121e-12
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)1.56e-11
Glyma.01G037200 hypothetical protein NA 1Chr01:3946315–3948100 (-)2.177e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)7.724e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)7.724e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.376e-11
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)8.591e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)9.936e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)5.503e-12
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)1.094e-13
Glyma.03G019700 hypothetical protein AT3G61130:GAUT1:galacturonosyltransferase 1 1Chr03:2010835–2018418 (+)6.981e-15
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)2.917e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)8.529e-14
Glyma.03G022300 hypothetical protein AT3G60880:DHDPS1:dihydrodipicolinate synthase 1 1Chr03:2331191–2334210 (-)4.518e-11
Glyma.03G041500 hypothetical protein NA 1Chr03:5249601–5251509 (-)4.932e-11
Glyma.03G042300 hypothetical protein NA 1Chr03:5350737–5353536 (-)2.552e-11
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)3.333e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)7.102e-16
Glyma.04G018000 hypothetical protein AT5G42310:AT5G42310:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr04:1402993–1407323 (-)1.46e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)2.601e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)3.421e-15
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)1.42e-13
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.206e-14
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.552e-14
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.552e-14
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.27e-15
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.076e-15
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.076e-15
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)4.334e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.363e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.523e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)9.166e-16
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)3.342e-13
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)3.342e-13
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)3.342e-13
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)3.014e-12
Glyma.06G121000 hypothetical protein NA 1Chr06:9848464–9850191 (-)4.396e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)7.048e-19
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)7.048e-19
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)2.345e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)1.703e-14
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)3.834e-11
Glyma.06G202000 hypothetical protein AT5G07940:AT5G07940:dentin sialophosphoprotein-like protein 1Chr06:18655235–18667810 (-)6.692e-11
Glyma.07G019900 hypothetical protein AT1G79870:AT1G79870:D-isomer specific 2-hydroxyacid dehydrogenase family protein 1Chr07:1561952–1564494 (+)1.432e-11
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 1Chr07:6270176–6283087 (-)2.335e-11
Glyma.07G069600 hypothetical protein AT4G00370:ANTR2:Major facilitator superfamily protein 1Chr07:6307073–6313498 (-)1.773e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)6.571e-15
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)4.323e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)8.715e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)9.03e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.668e-11
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)3.944e-11
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)3.944e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)2.588e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.207e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.927e-11
Glyma.09G202900 hypothetical protein AT5G10560:AT5G10560:Glycosyl hydrolase family protein 1Chr09:42685911–42690981 (-)9.983e-11
Glyma.09G237900 hypothetical protein NA 1Chr09:45960580–45964267 (+)1.81e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)2.582e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)3.138e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)1.6e-11
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)1.431e-11
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)1.431e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.676e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.676e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.676e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.676e-13
Glyma.10G080600 hypothetical protein NA 1Chr10:9501678–9504456 (+)8.141e-11
Glyma.10G080700 hypothetical protein NA 1Chr10:9510013–9512097 (+)8.141e-11
Glyma.10G080900 hypothetical protein NA 1Chr10:9552268–9552854 (+)8.141e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)5.217e-14
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.089e-12
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)4.579e-11
Glyma.11G179000 hypothetical protein AT2G27230:LHW:transcription factor-like protein 1Chr11:24412040–24417199 (+)2.028e-12
Glyma.12G096000 hypothetical protein AT1G08465:YAB2:Plant-specific transcription factor YABBY family protein 1Chr12:8080306–8088711 (-)8.04e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.283e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.283e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.544e-15
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.544e-15
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)6.395e-13
Glyma.12G193800 hypothetical protein AT2G05710:ACO3:aconitase 3 1Chr12:35551596–35559129 (+)6.859e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.696e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.696e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)8.508e-13
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)2.404e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.826e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.826e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.348e-13
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)7.762e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)3.97e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)9.702e-17
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)1.431e-13
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)6.792e-12
Glyma.14G150000 hypothetical protein AT1G21830:AT1G21830:uncharacterized protein 1Chr14:32314092–32316626 (+)2.106e-11
Glyma.14G150300 hypothetical protein AT4G08330:AT4G08330:uncharacterized protein 1Chr14:32471354–32474446 (-)2.699e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)8.388e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.33e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)8.388e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)8.388e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.082e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)7.326e-16
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)2.207e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.728e-13
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)3.451e-12
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)3.451e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)6.611e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)7.823e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)4.776e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)3.917e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.04e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.338e-13
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)3.228e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)5.517e-11
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)6.287e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)3.354e-11
Glyma.17G038400 hypothetical protein AT3G17330:ECT6:evolutionarily conserved C-terminal region 6 1Chr17:2836787–2841979 (-)3.386e-11
Glyma.17G038500 hypothetical protein NA 1Chr17:2843533–2853547 (-)3.386e-11
Glyma.17G039300 hypothetical protein AT4G15230:ABCG30:pleiotropic drug resistance 2__AT4G15233:ABCG42:ABC-2 and Plant PDR ABC-type transporter family protei… 1Chr17:2918657–2932426 (-)4.012e-11
Glyma.17G041900 hypothetical protein NA 1Chr17:3110735–3117594 (+)6.687e-11
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)9.836e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)1.223e-12
Glyma.18G091600 hypothetical protein NA 1Chr18:9165090–9166656 (-)3.844e-11
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)3.055e-13
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)9.935e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)2.344e-14
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.637e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.637e-12
Glyma.19G075600 hypothetical protein AT5G14240:AT5G14240:Thioredoxin superfamily protein 1Chr19:27307550–27313078 (-)7.003e-13
Glyma.19G075800 hypothetical protein NA 1Chr19:27389417–27399207 (-)7.003e-13
Glyma.19G076300 hypothetical protein AT5G14260:AT5G14260:Rubisco methyltransferase family protein 1Chr19:27514513–27519961 (+)7.003e-13
Glyma.19G086700 hypothetical protein AT5G14230:AT5G14230:ankyrin 1Chr19:30860484–30866060 (+)4.604e-11
Glyma.20G222800 hypothetical protein AT3G04760:AT3G04760:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr20:45748122–45750353 (+)8.53e-11