Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P28399

Metabolite ID
P28399
Deionized mass
510.2602 Da
Average m/z
511.2659
Average RT
15.4887
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
48
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

48 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.02G006500 hypothetical protein AT4G01660:ABC1:ABC transporter 1 2Chr02:693193–700260 (+)1.405e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 2Chr16:35831912–35835153 (+)2.013e-11
Glyma.02G107400 hypothetical protein NA 1Chr02:10245905–10246706 (-)2.153e-13
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)2.474e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.83e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.655e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.168e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.715e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.715e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.036e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.621e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.621e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.621e-12
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)3.482e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)2.719e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.789e-12
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)6.937e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)6.937e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)4.578e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.714e-11
Glyma.09G052400 hypothetical protein AT1G31040:AT1G31040:PLATZ transcription factor family protein 1Chr09:4583416–4589291 (-)1.443e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.774e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.405e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.965e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.965e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.965e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.965e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.094e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)9.072e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.199e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.199e-13
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)6.307e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.264e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.496e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.264e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.264e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)5.263e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)8.486e-15
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)7.62e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.814e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.236e-11
Glyma.17G189300 hypothetical protein NA 1Chr17:25644440–25649489 (-)7.706e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)6.19e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)7.903e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.168e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.168e-12
Glyma.19G129500 hypothetical protein AT2G41160:AT2G41160:Ubiquitin-associated (UBA) protein 1Chr19:38884116–38901744 (-)2.248e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.031e-11