Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P28310

Metabolite ID
P28310
Deionized mass
364.2221 Da
Average m/z
365.2287
Average RT
15.4667
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
55
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

55 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.05G151200 ACSL2 long-chain acyl-CoA synthetase ACSL2 AT3G23790:AAE16:AMP-dependent synthetase and ligase family protein 2Chr05:34489326–34501948 (+)3.278e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)7.126e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)7.126e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)5.31e-11
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)8.604e-12
Glyma.15G140700 hypothetical protein NA 2Chr15:11520847–11522863 (-)3.159e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)1.289e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)5.968e-14
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)5.968e-14
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)5.967e-13
Glyma.03G001400 hypothetical protein AT2G38610:AT2G38610:RNA-binding KH domain-containing protein 1Chr03:160599–165525 (+)2.26e-12
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)2.996e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.131e-12
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)2.159e-12
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)5.421e-11
Glyma.05G147900 hypothetical protein AT1G27340:LCR:Galactose oxidase/kelch repeat superfamily protein 1Chr05:34213379–34217429 (+)4.211e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)6.833e-14
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)6.833e-14
Glyma.05G151100 hypothetical protein AT4G19710:AK-HSDH II:aspartate kinase-homoserine dehydrogenase ii 1Chr05:34473194–34488860 (-)3.278e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.545e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.209e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.145e-11
Glyma.06G284900 BZIP50 bZIP transcription factor bZIP50 AT3G58120:BZIP61:Basic-leucine zipper (bZIP) transcription factor family protein__AT2G42380:BZIP34:Basic-leucine zipper… 1Chr06:47339957–47343650 (-)3.119e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)1.628e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)3.416e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)7.126e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)7.126e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)7.126e-13
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)1.117e-13
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)1.117e-13
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)9.803e-12
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)7.584e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)5.31e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.408e-12
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)2.408e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)2.408e-12
Glyma.13G180300 hypothetical protein NA 1Chr13:29378090–29379784 (-)1.621e-12
Glyma.13G184500 hypothetical protein NA 1Chr13:29829471–29834027 (+)7.226e-11
Glyma.13G185400 hypothetical protein NA 1Chr13:29936606–29937420 (+)5.389e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)3.797e-11
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)2.303e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)2.303e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)3.637e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)8.605e-12
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)4.574e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)5.418e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.38e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.341e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)8.076e-12
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)3.237e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.173e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.173e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.141e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.082e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.446e-15