Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P28302

Metabolite ID
P28302
Deionized mass
318.0400 Da
Average m/z
319.0451
Average RT
15.4630
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
78
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

78 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)5.989e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)1.053e-11
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)4.959e-11
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)4.849e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.613e-11
Glyma.09G053800 hypothetical protein NA 2Chr09:4737413–4755632 (-)2.965e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)1.008e-11
Glyma.10G081700 hypothetical protein NA 2Chr10:9752508–9758422 (+)1.493e-15
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)3.795e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)5.989e-13
Glyma.01G016500 hypothetical protein AT4G25960:ABCB2:P-glycoprotein 2 1Chr01:1573790–1583422 (+)4.047e-11
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)1.087e-13
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)2.703e-12
Glyma.02G113000 hypothetical protein AT1G69370:CM3:chorismate mutase 3 1Chr02:10939096–10941983 (-)1.736e-12
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)3.542e-12
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)7.697e-13
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)3.172e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.108e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.857e-14
Glyma.03G136000 hypothetical protein NA 1Chr03:35138670–35188160 (-)9.711e-11
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)3.462e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.263e-20
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.909e-26
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.88e-20
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)2.144e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.613e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.613e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.613e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.613e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)8.19e-12
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)5.266e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.749e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.749e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.749e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.749e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)8.396e-14
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)1.099e-13
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)2.236e-13
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)2.236e-13
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)2.236e-13
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)2.236e-13
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.038e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.038e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.038e-11
Glyma.11G239000 hypothetical protein AT5G10120:AT5G10120:Ethylene insensitive 3 family protein 1Chr11:33337797–33339122 (-)4.262e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)4.3e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.481e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.481e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.053e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)5.346e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)1.981e-14
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)1.28e-11
Glyma.13G204200 hypothetical protein NA 1Chr13:31822330–31826011 (+)3.607e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)3.795e-13
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)9.667e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)9.667e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)9.667e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)4.959e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)4.959e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)4.959e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)4.959e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.988e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)2.503e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.271e-12
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)1.757e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.158e-13
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)4.137e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.205e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.205e-12
Glyma.18G098900 hypothetical protein NA 1Chr18:10297476–10305043 (+)1.014e-11
Glyma.18G099000 hypothetical protein AT5G54920:AT5G54920:polyadenylate-binding protein interacting protein 1Chr18:10326925–10347143 (-)1.014e-11
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)6.791e-12
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)9.044e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)2.89e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)5.284e-12
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)6.352e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)3.886e-12
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)4.305e-11