Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P28109

Metabolite ID
P28109
Deionized mass
120.0555 Da
Average m/z
121.0638
Average RT
15.4073
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
41
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

41 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G237500 AT1G79560 protein AT1G79560:FTSH12:FTSH protease 12 3Chr08:20191321–20257603 (-)4.339e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.358e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.358e-11
Glyma.19G127700 hypothetical protein AT5G12250:TUB6:beta-6 tubulin 2Chr19:38632803–38635633 (+)3.266e-13
Glyma.20G021900 hypothetical protein AT5G37340:AT5G37340:ZPR1 zinc-finger domain protein 2Chr20:2227480–2247807 (+)5.085e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)8.212e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)8.211e-12
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)1.03e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)5.429e-11
Glyma.06G078400 hypothetical protein AT4G31290:AT4G31290:ChaC-like family protein 1Chr06:6068728–6071360 (+)1.568e-11
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)5.287e-12
Glyma.08G236300 hypothetical protein NA 1Chr08:19980951–19982026 (-)4.339e-12
Glyma.08G236400 hypothetical protein AT1G56050:AT1G56050:GTP-binding protein-like protein 1Chr08:20009675–20029987 (-)4.339e-12
Glyma.08G236700 hypothetical protein AT1G79090:AT1G79090:topoisomerase II-associated protein 1Chr08:20051144–20053515 (+)4.339e-12
Glyma.08G236800 Conserved telomere maintenance component 1 AT4G09680:CTC1:conserved telomere maintenance component 1 1Chr08:20067579–20081988 (-)4.339e-12
Glyma.08G237200 hypothetical protein AT1G79570:AT1G79570:kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein 1Chr08:20140030–20147276 (+)4.339e-12
Glyma.08G237800 hypothetical protein NA 1Chr08:20272407–20273172 (-)4.339e-12
Glyma.08G238100 hypothetical protein NA 1Chr08:20294013–20296401 (-)4.339e-12
Glyma.08G239500 hypothetical protein AT4G09180:FBH2:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:20444715–20447665 (-)5.452e-15
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)3.966e-11
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)3.559e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.875e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.875e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.041e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.041e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)4.83e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)4.83e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.358e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)3.277e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)3.277e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)6.916e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)6.916e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)8.304e-12
Glyma.18G202600 FAD7-1 omega-3 fatty acid desaturase NA 1Chr18:48365045–48368299 (-)3.646e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)3.055e-11
Glyma.18G294900 hypothetical protein NA 1Chr18:57235496–57236456 (+)1.633e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)7.034e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)7.034e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.051e-11
Glyma.20G021600 PT12 AT1G20860:PHT1;8:phosphate transporter 1;8__AT1G76430:PHT1;9:phosphate transporter 1;9 1Chr20:2196534–2205616 (+)2.3e-11
Glyma.20G022000 hypothetical protein NA 1Chr20:2262949–2267229 (+)5.085e-11