Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P28064

Metabolite ID
P28064
Deionized mass
502.1091 Da
Average m/z
503.1178
Average RT
15.3921
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
74
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

74 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G181100 hypothetical protein NA 10Chr16:34198761–34209007 (-)4.844e-13
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 4Chr08:11525692–11536927 (+)2.163e-12
Glyma.16G180800 hypothetical protein AT1G02260:AT1G02260:Divalent ion symporter 4Chr16:34164228–34171821 (+)1.227e-15
Glyma.16G181300 hypothetical protein NA 4Chr16:34225053–34233073 (-)9.971e-14
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)6.232e-13
Glyma.16G172800 hypothetical protein AT3G49142:AT3G49142:Tetratricopeptide repeat (TPR)-like superfamily protein 3Chr16:33359317–33362446 (+)2.386e-13
Glyma.16G180600 hypothetical protein AT5G52430:AT5G52430:hydroxyproline-rich glycoprotein family protein 3Chr16:34129875–34134314 (+)1.389e-12
Glyma.16G181200 hypothetical protein NA 3Chr16:34216133–34221470 (-)1.282e-13
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)6.909e-13
Glyma.11G145000 hypothetical protein AT4G27490:RRP41L:3'-5'-exoribonuclease family protein 2Chr11:11117760–11123162 (+)3.462e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)3.372e-11
Glyma.16G173600 hypothetical protein AT5G24030:SLAH3:SLAC1 homologue 3 2Chr16:33407719–33412908 (-)7.008e-12
Glyma.16G219000 hypothetical protein NA 2Chr16:37634112–37638596 (-)1.134e-11
Glyma.17G144400 hypothetical protein NA 2Chr17:11801158–11803913 (+)2.542e-11
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)2.701e-12
Glyma.01G021700 hypothetical protein NA 1Chr01:2197811–2200232 (+)9.636e-12
Glyma.01G022000 hypothetical protein NA 1Chr01:2209688–2210849 (-)9.636e-12
Glyma.01G022200 hypothetical protein NA 1Chr01:2212834–2213622 (+)9.635e-12
Glyma.02G295900 hypothetical protein NA 1Chr02:47375932–47378006 (+)4.168e-14
Glyma.02G296200 hypothetical protein AT5G55390:EDM2:ENHANCED DOWNY MILDEW 2 1Chr02:47383044–47395946 (-)4.168e-14
Glyma.02G296300 hypothetical protein AT5G55400:AT5G55400:Actin binding Calponin homology (CH) domain-containing protein 1Chr02:47399263–47406220 (-)1.086e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.264e-11
Glyma.03G035800 hypothetical protein NA 1Chr03:4317466–4321009 (+)4.334e-11
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)4.059e-11
Glyma.03G136000 hypothetical protein NA 1Chr03:35138670–35188160 (-)2.48e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)9.048e-11
Glyma.04G190700 hypothetical protein NA 1Chr04:46143583–46146881 (+)2.859e-11
Glyma.04G190800 hypothetical protein AT5G07460:PMSR2:peptidemethionine sulfoxide reductase 2 1Chr04:46143080–46147709 (-)2.859e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.044e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.152e-11
Glyma.08G104600 hypothetical protein AT1G27930:AT1G27930:glucuronoxylan 4-O-methyltransferase-like protein (DUF579) 1Chr08:8045602–8047222 (-)4.956e-11
Glyma.08G107800 AK-HSDH aspartokinase-homoserine dehydrogenase AT4G19710:AK-HSDH II:aspartate kinase-homoserine dehydrogenase ii 1Chr08:8296196–8307328 (-)1.629e-11
Glyma.08G108400 hypothetical protein NA 1Chr08:8326311–8330206 (+)1.629e-11
Glyma.08G109000 SUB1 NA 1Chr08:8364770–8373803 (-)2.967e-11
Glyma.08G110000 hypothetical protein AT3G23840:AT3G23840:HXXXD-type acyl-transferase family protein 1Chr08:8438346–8442806 (-)2.967e-11
Glyma.08G110200 hypothetical protein NA 1Chr08:8471393–8473156 (+)9.962e-11
Glyma.08G150300 hypothetical protein NA 1Chr08:11550134–11555581 (+)2.144e-11
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)3.369e-13
Glyma.09G252000 hypothetical protein AT2G40730:CTEXP:kinase family with ARM repeat domain-containing protein 1Chr09:47233101–47242848 (+)4.763e-13
Glyma.09G252300 hypothetical protein AT5G16520:AT5G16520:uncharacterized protein 1Chr09:47254519–47261787 (-)4.763e-13
Glyma.09G272300 hypothetical protein AT5G01950:AT5G01950:Leucine-rich repeat protein kinase family protein 1Chr09:48873276–48883421 (-)3.206e-11
Glyma.09G272800 hypothetical protein AT3G08670:AT3G08670:serine/arginine repetitive matrix-like protein 1Chr09:48916725–48921396 (+)3.206e-11
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)7.22e-12
Glyma.11G021800 hypothetical protein NA 1Chr11:1548263–1551230 (+)5.968e-11
Glyma.11G144800 hypothetical protein AT2G28250:NCRK:Protein kinase superfamily protein 1Chr11:11096950–11105343 (+)3.462e-11
Glyma.11G240600 hypothetical protein NA 1Chr11:33491895–33493311 (+)3.234e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)8.089e-14
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)8.089e-14
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)2.692e-12
Glyma.12G202700 hypothetical protein AT2G20875:EPF1:epidermal patterning factor 1 1Chr12:36329374–36330905 (-)6.547e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)6.86e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)6.86e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)6.86e-11
Glyma.14G094500 hypothetical protein NA 1Chr14:8788109–8793948 (-)2.277e-12
Glyma.14G095700 hypothetical protein AT2G26140:ftsh4:FTSH protease 4 1Chr14:8906064–8920433 (-)3.731e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)3.372e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)4.553e-14
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)5.941e-11
Glyma.16G147400 hypothetical protein NA 1Chr16:30817535–30821568 (+)2.507e-11
Glyma.16G160900 hypothetical protein NA 1Chr16:32013447–32016235 (+)9.321e-11
Glyma.16G173000 hypothetical protein NA 1Chr16:33365497–33367017 (+)9.053e-12
Glyma.16G178700 hypothetical protein AT5G52660:AT5G52660:Homeodomain-like superfamily protein 1Chr16:33941617–33948775 (+)6.27e-12
Glyma.16G179100 BCH2 beta-carotene hydroxylase BCH2 AT4G25700:BETA-OHASE 1:beta-hydroxylase 1__AT5G52570:BETA-OHASE 2:beta-carotene hydroxylase 2 1Chr16:33969618–33972333 (-)1.075e-13
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.06e-16
Glyma.16G180200 hypothetical protein NA 1Chr16:34077613–34081734 (+)5.864e-11
Glyma.16G180400 hypothetical protein AT5G23950:AT5G23950:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr16:34093033–34094634 (+)5.903e-12
Glyma.16G180900 hypothetical protein AT1G02260:AT1G02260:Divalent ion symporter 1Chr16:34177189–34181506 (+)8.363e-11
Glyma.16G181000 hypothetical protein NA 1Chr16:34189551–34197531 (+)9.266e-11
Glyma.16G181500 hypothetical protein NA 1Chr16:34246093–34253876 (+)8.431e-13
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)4.075e-11
Glyma.16G212900 hypothetical protein NA 1Chr16:37111887–37116497 (+)1.499e-11
Glyma.16G219700 hypothetical protein NA 1Chr16:37690133–37695529 (-)6.889e-11
Glyma.17G144600 hypothetical protein NA 1Chr17:11840299–11840904 (+)2.215e-11
Glyma.17G144700 hypothetical protein AT4G16780:HB-2:homeobox protein 2__AT5G47370:HAT2:Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein 1Chr17:11842537–11844642 (+)5.188e-11