Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P28050

Metabolite ID
P28050
Deionized mass
535.1050 Da
Average m/z
536.1112
Average RT
15.3888
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
41
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

41 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.02G188300 hypothetical protein NA 2Chr02:35008552–35027979 (-)2.083e-12
Glyma.02G194200 hypothetical protein NA 2Chr02:36747224–36756569 (+)2.89e-11
Glyma.03G251100 hypothetical protein AT3G04490:AT3G04490:exportin-4 protein 2Chr03:44673965–44702804 (-)7.198e-11
Glyma.06G201700 hypothetical protein NA 2Chr06:18577883–18617874 (+)9.726e-12
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)1.331e-11
Glyma.01G168800 hypothetical protein AT1G24430:AT1G24430:HXXXD-type acyl-transferase family protein 1Chr01:50633986–50636589 (+)9.937e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)3.548e-15
Glyma.02G193700 hypothetical protein AT3G11760:AT3G11760:structural maintenance of chromosomes flexible hinge domain protein 1Chr02:36672656–36676028 (+)2.89e-11
Glyma.02G193800 hypothetical protein AT5G06470:AT5G06470:Glutaredoxin family protein 1Chr02:36706657–36712744 (-)2.89e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.374e-15
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)4.281e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)4.747e-12
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)1.365e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)6.219e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.729e-11
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)3.007e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.007e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.178e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.178e-13
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)3.187e-11
Glyma.08G115700 hypothetical protein AT1G29120:AT1G29120:Hydrolase-like protein family 1Chr08:8868075–8876513 (+)6.282e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.346e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)9.668e-13
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)2.767e-12
Glyma.11G184600 hypothetical protein AT4G08960:AT4G08960:phosphotyrosyl phosphatase activator (PTPA) family protein 1Chr11:25265163–25267323 (-)5.943e-12
Glyma.11G184900 hypothetical protein AT3G44530:HIRA:histone chaperone HIRA-like protein 1Chr11:25289268–25298978 (+)5.943e-12
Glyma.11G185000 hypothetical protein AT4G33790:CER4:Jojoba acyl CoA reductase-related male sterility protein 1Chr11:25310949–25318127 (+)3.111e-11
Glyma.11G185200 hypothetical protein AT4G33790:CER4:Jojoba acyl CoA reductase-related male sterility protein 1Chr11:25361462–25369894 (+)3.111e-11
Glyma.11G185300 hypothetical protein AT3G44540:FAR4:fatty acid reductase 4 1Chr11:25389935–25398374 (-)3.111e-11
Glyma.11G185500 hypothetical protein AT5G20890:AT5G20890:TCP-1/cpn60 chaperonin family protein 1Chr11:25416977–25424958 (-)3.111e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)1.272e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)3.208e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)3.208e-11
Glyma.13G202000 hypothetical protein NA 1Chr13:31566728–31571708 (-)7.878e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)8.05e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.81e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.596e-13
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.596e-13
Glyma.17G118900 hypothetical protein NA 1Chr17:9401882–9402864 (+)6.954e-11
Glyma.18G179200 hypothetical protein NA 1Chr18:43222934–43228759 (-)3.251e-12
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)2.843e-11