Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P27629

Metabolite ID
P27629
Deionized mass
609.1783 Da
Average m/z
610.1853
Average RT
15.2707
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
46
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

46 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)9.849e-13
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)6.971e-11
Glyma.07G068300 hypothetical protein AT5G62980:FOLB2:Dihydroneopterin aldolase__AT3G11750:FOLB1:Dihydroneopterin aldolase 2Chr07:6169729–6172231 (+)6.608e-12
Glyma.07G068600 hypothetical protein NA 2Chr07:6192764–6197166 (+)7.434e-12
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)3.417e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)9.643e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)6.851e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)6.851e-12
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)9.769e-14
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)1.098e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.719e-11
Glyma.03G108400 hypothetical protein NA 1Chr03:30897839–30899556 (+)1.065e-11
Glyma.03G109100 hypothetical protein NA 1Chr03:31002094–31010324 (-)3.27e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.493e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)9.242e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)9.083e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.786e-16
Glyma.07G068000 hypothetical protein AT3G61460:BRH1: 1Chr07:6128862–6129740 (+)3.787e-12
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)1.438e-12
Glyma.07G068400 hypothetical protein AT1G29320:AT1G29320:Transducin/WD40 repeat-like superfamily protein 1Chr07:6173172–6180430 (-)7.434e-12
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)5.656e-12
Glyma.07G068800 hypothetical protein NA 1Chr07:6211775–6221107 (-)5.656e-12
Glyma.07G069100 hypothetical protein NA 1Chr07:6246145–6250192 (+)7.434e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)9.643e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)9.643e-11
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)3.417e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)9.643e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)9.471e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)9.471e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.433e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.433e-12
Glyma.13G170600 ALDH2B6 aldehyde dehydrogenase family 2 member B6 AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 1Chr13:28436396–28440865 (-)3.962e-11
Glyma.13G224300 hypothetical protein NA 1Chr13:33703380–33715996 (-)3.939e-11
Glyma.13G224800 hypothetical protein NA 1Chr13:33748627–33756494 (-)3.94e-11
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)2.314e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)2.314e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)1.073e-13
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)3.64e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)9.515e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)6.971e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)6.971e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.329e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.87e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)6.847e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)9.32e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.519e-15