Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P27479

Metabolite ID
P27479
Deionized mass
689.3410 Da
Average m/z
690.3430
Average RT
15.2322
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
47
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

47 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 2Chr03:2007617–2009871 (+)5.684e-12
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)4.394e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)9.434e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)9.434e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)4.671e-12
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)5.973e-14
Glyma.03G019700 hypothetical protein AT3G61130:GAUT1:galacturonosyltransferase 1 1Chr03:2010835–2018418 (+)1.768e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.299e-14
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)4.337e-13
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.836e-11
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)2.155e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.388e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.647e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.677e-13
Glyma.08G303300 hypothetical protein NA 1Chr08:42134782–42139026 (+)1.013e-12
Glyma.08G303400 hypothetical protein NA 1Chr08:42139097–42147365 (+)1.013e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)6.739e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)6.739e-13
Glyma.12G183700 hypothetical protein AT2G27600:SKD1:AAA-type ATPase family protein 1Chr12:34470517–34477475 (-)7.636e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)8.778e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)4.265e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)4.265e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)9.434e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)4.35e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)4.671e-12
Glyma.14G179900 hypothetical protein NA 1Chr14:44227886–44232217 (-)7.103e-13
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)6.417e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.427e-17
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)7.885e-17
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.427e-17
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.427e-17
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.276e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.897e-13
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)6.841e-11
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)1.018e-16
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)2.73e-12
Glyma.16G144900 hypothetical protein AT2G23540:AT2G23540:GDSL-like Lipase/Acylhydrolase superfamily protein 1Chr16:30549575–30553059 (+)2.268e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)2.744e-14
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)7.621e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)2.743e-14
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)6.455e-13
Glyma.17G213000 hypothetical protein NA 1Chr17:35353582–35358772 (+)6.358e-11
Glyma.17G215300 hypothetical protein AT5G25265:AT5G25265:Hyp O-arabinosyltransferase-like protein 1Chr17:36142245–36146771 (-)5.65e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)2.699e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)5.973e-14
Glyma.17G258400 hypothetical protein AT1G30755:AT1G30755:elongation factor G, putative (DUF668) 1Chr17:41248979–41254225 (+)1.283e-11
Glyma.20G114300 hypothetical protein AT3G25840:AT3G25840:Protein kinase superfamily protein 1Chr20:35602598–35610724 (+)1.967e-11