Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P27478

Metabolite ID
P27478
Deionized mass
262.0811 Da
Average m/z
263.0886
Average RT
15.2321
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
72
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

72 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 3Chr18:47102746–47129707 (+)3.771e-12
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)1.462e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.429e-11
Glyma.14G171400 hypothetical protein NA 2Chr14:42398866–42404627 (+)3.827e-11
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)5.756e-12
Glyma.18G198200 hypothetical protein NA 2Chr18:47594340–47597395 (+)1.698e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)1.148e-13
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)1.653e-15
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)9.238e-19
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)1.379e-17
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)1.354e-14
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)1.354e-14
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)1.354e-14
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)1.354e-14
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)1.354e-14
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)1.354e-14
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)1.354e-14
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)1.462e-13
Glyma.01G127400 hypothetical protein AT1G58170:AT1G58170:Disease resistance-responsive (dirigent-like protein) family protein__AT1G55210:AT1G55210:Disease r… 1Chr01:43890586–43892006 (+)1.171e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)9.574e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)9.574e-12
Glyma.02G150900 hypothetical protein AT4G03010:AT4G03010:RNI-like superfamily protein 1Chr02:15536593–15542665 (+)2.271e-11
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)6.402e-12
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)1.191e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)3.809e-12
Glyma.03G022900 hypothetical protein NA 1Chr03:2409690–2420328 (-)4.788e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.794e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.047e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)7.889e-12
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)9.037e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.732e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.582e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.582e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.582e-11
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)7.678e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.644e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.168e-13
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)7.647e-11
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)1.191e-14
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.429e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.429e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.429e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.429e-11
Glyma.08G123100 hypothetical protein AT3G20050:TCP-1:T-complex protein 1 alpha subunit 1Chr08:9468076–9475710 (-)1.089e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)8.922e-12
Glyma.11G000700 hypothetical protein AT4G34150:AT4G34150:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr11:33497–35198 (+)3.546e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)1.018e-17
Glyma.11G048600 hypothetical protein AT5G67470:FH6:formin homolog 6 1Chr11:3634128–3639401 (-)1.018e-13
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)3.186e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)5.932e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)5.932e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)3.186e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)3.593e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)3.617e-11
Glyma.14G013500 hypothetical protein AT4G25434:NUDT10:nudix hydrolase homolog 10 1Chr14:1009519–1014238 (+)9.798e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)9.703e-12
Glyma.14G171200 hypothetical protein AT1G19970:AT1G19970:ER lumen protein retaining receptor family protein 1Chr14:42387905–42389129 (+)3.827e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.938e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.141e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.938e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.938e-12
Glyma.15G139000 hypothetical protein NA 1Chr15:11314329–11317181 (-)2.283e-11
Glyma.15G257100 hypothetical protein AT1G56070:LOS1:Ribosomal protein S5/Elongation factor G/III/V family protein 1Chr15:48661607–48665946 (-)3.697e-11
Glyma.16G024600 hypothetical protein AT1G01320:AT1G01320:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:2374161–2391216 (-)8.453e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)3.61e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)4.027e-13
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)4.027e-13
Glyma.18G197500 hypothetical protein NA 1Chr18:47377826–47380850 (+)1.994e-12
Glyma.18G198100 hypothetical protein NA 1Chr18:47592690–47593950 (-)1.698e-11
Glyma.18G198300 hypothetical protein NA 1Chr18:47598384–47601202 (-)1.698e-11
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)2.252e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)3.508e-11