Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P27302

Metabolite ID
P27302
Deionized mass
537.5789 Da
Average m/z
538.5842
Average RT
15.1624
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
96
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

96 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)5.101e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)3.117e-13
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)2.085e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)5.256e-13
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)8.683e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)7.775e-12
Glyma.09G210200 hypothetical protein AT1G31940:AT1G31940:cystic fibrosis transmembrane conductance regulator 2Chr09:43432969–43437575 (-)1.756e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)1.601e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)5.633e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.485e-16
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.485e-16
Glyma.16G121500 hypothetical protein NA 2Chr16:27007186–27010856 (+)1.595e-12
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)5.947e-13
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)9.364e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)5.101e-12
Glyma.03G019700 hypothetical protein AT3G61130:GAUT1:galacturonosyltransferase 1 1Chr03:2010835–2018418 (+)9.757e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.359e-14
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)1.86e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)6.925e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)8.284e-11
Glyma.04G082800 hypothetical protein NA 1Chr04:6977997–6983005 (-)2.685e-11
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)2.717e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)3.428e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.69e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.225e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.682e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)5.131e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)5.131e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)5.131e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.408e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.408e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)7.238e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)7.775e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)7.775e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)7.775e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)7.775e-12
Glyma.09G056300 hypothetical protein NA 1Chr09:5059486–5068979 (+)4.23e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)2.58e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)7.507e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)1.044e-12
Glyma.09G210000 hypothetical protein AT5G45620:AT5G45620:Proteasome component (PCI) domain protein 1Chr09:43422744–43428344 (-)6.414e-11
Glyma.09G210700 hypothetical protein AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 1Chr09:43466944–43471858 (-)7.708e-12
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)8.35e-15
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)2.688e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)2.688e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)2.688e-11
Glyma.11G239000 hypothetical protein AT5G10120:AT5G10120:Ethylene insensitive 3 family protein 1Chr11:33337797–33339122 (-)1.025e-12
Glyma.12G079700 hypothetical protein AT1G08110:AT1G08110:lactoylglutathione lyase family protein / glyoxalase I family protein 1Chr12:6241940–6246776 (+)1.596e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.251e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.251e-11
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)7.231e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.157e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.157e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)1.518e-13
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.343e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)4.545e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)4.545e-13
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)3.117e-13
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)2.185e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.098e-15
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.098e-15
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.485e-16
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)6.625e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)6.625e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)2.503e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)6.002e-15
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)7.79e-15
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)6.002e-15
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)6.002e-15
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)2.085e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)2.085e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)2.085e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)2.085e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)4.539e-13
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)8.683e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)8.683e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.217e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.264e-13
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)2.818e-14
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)3.052e-12
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)3.356e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)3.356e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)5.65e-11
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)1.557e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)9.973e-18
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)9.692e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)9.737e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)9.737e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)2.862e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)1.106e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)5.875e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.135e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.135e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)5.911e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)4.311e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.123e-16