Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P27256

Metabolite ID
P27256
Deionized mass
1039.2223 Da
Average m/z
1040.2279
Average RT
15.1492
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
57
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

57 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 7Chr03:2202325–2234931 (+)6.136e-13
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)1.194e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)1.194e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)1.194e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)6.782e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)5.165e-16
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)5.165e-16
Glyma.02G109400 hypothetical protein NA 1Chr02:10495046–10497626 (-)1.648e-11
Glyma.02G109900 hypothetical protein AT2G03150:emb1579:ATP/GTP-binding protein family 1Chr02:10547851–10557930 (+)1.648e-11
Glyma.03G041800 hypothetical protein NA 1Chr03:5307518–5311842 (+)7.446e-11
Glyma.03G146400 hypothetical protein AT2G41970:AT2G41970:Protein kinase superfamily protein 1Chr03:36170481–36174029 (+)9.413e-12
Glyma.03G146500 hypothetical protein AT2G41960:AT2G41960:uncharacterized protein 1Chr03:36181312–36189521 (+)9.413e-12
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)3.413e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)2.995e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)9.899e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4.954e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4.954e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)3.503e-12
Glyma.09G209900 hypothetical protein AT1G31930:XLG3:extra-large GTP-binding protein 3 1Chr09:43412726–43419532 (+)1.048e-11
Glyma.09G210200 hypothetical protein AT1G31940:AT1G31940:cystic fibrosis transmembrane conductance regulator 1Chr09:43432969–43437575 (-)2.465e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)1.194e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)1.194e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)1.194e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)1.194e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)1.194e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)1.506e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)5.561e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)5.561e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.581e-14
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.581e-14
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)5.165e-16
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)1.683e-15
Glyma.13G156200 hypothetical protein AT1G80710:DRS1:DROUGHT SENSITIVE 1 1Chr13:27115515–27118951 (+)6.101e-11
Glyma.13G163400 hypothetical protein AT5G20350:TIP1:Ankyrin repeat family protein with DHHC zinc finger domain-containing protein 1Chr13:27861309–27869162 (+)5.984e-13
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.504e-13
Glyma.14G190100 hypothetical protein AT2G04280:AT2G04280:calcium ion-binding protein 1Chr14:45502008–45504459 (+)1.502e-12
Glyma.14G190800 hypothetical protein NA 1Chr14:45566998–45568488 (-)1.268e-12
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)7.772e-11
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)7.772e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)7.619e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)3.131e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)5.719e-17
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)1.29e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)3.939e-14
Glyma.16G138900 hypothetical protein NA 1Chr16:29620531–29621995 (+)6.869e-13
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)9.327e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)9.212e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)9.212e-12
Glyma.17G251800 hypothetical protein NA 1Chr17:40633579–40636068 (+)2.422e-11
Glyma.17G251900 hypothetical protein AT1G19600:AT1G19600:pfkB-like carbohydrate kinase family protein 1Chr17:40641019–40644794 (+)2.422e-11
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)4.332e-11
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)5.221e-11
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)4.332e-11
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)4.331e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)9.982e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)6.14e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.607e-11