Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P27241

Metabolite ID
P27241
Deionized mass
493.1720 Da
Average m/z
494.1799
Average RT
15.1443
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
40
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

40 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G183700 Fasciclin-like arabinogalactan protein 19 NA 3Chr08:14738283–14742033 (+)1.787e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)2.564e-11
Glyma.10G079800 hypothetical protein NA 2Chr10:9223520–9228511 (-)4.619e-16
Glyma.10G081200 hypothetical protein NA 2Chr10:9600771–9603988 (-)1.22e-16
Glyma.10G081700 hypothetical protein NA 2Chr10:9752508–9758422 (+)4.851e-14
Glyma.01G030500 hypothetical protein NA 1Chr01:3189212–3200277 (+)1.228e-12
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)2.009e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)5.215e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)2.72e-11
Glyma.03G014000 hypothetical protein AT1G01790:KEA1:K+ efflux antiporter 1 1Chr03:1405523–1417973 (+)9.935e-11
Glyma.03G014200 hypothetical protein NA 1Chr03:1423492–1424919 (+)9.935e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)7.953e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.259e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.259e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.042e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.871e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.871e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.871e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.843e-13
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)3.05e-11
Glyma.08G149500 hypothetical protein NA 1Chr08:11460264–11465243 (-)9.03e-11
Glyma.08G183800 hypothetical protein NA 1Chr08:14744295–14744525 (+)7.984e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)4.619e-16
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)4.619e-16
Glyma.10G079700 hypothetical protein AT2G35980:YLS9:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr10:9218478–9219468 (-)9.954e-16
Glyma.10G079900 hypothetical protein AT3G11650:NHL2:NDR1/HIN1-like 2 1Chr10:9245085–9246282 (-)3.836e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)4.619e-16
Glyma.10G080100 hypothetical protein AT2G44860:AT2G44860:Ribosomal protein L24e family protein 1Chr10:9295934–9296863 (-)3.836e-11
Glyma.10G080200 hypothetical protein NA 1Chr10:9350912–9352018 (+)3.836e-11
Glyma.10G080400 hypothetical protein AT2G33990:iqd9:IQ-domain 9 1Chr10:9454616–9455485 (+)6.213e-12
Glyma.10G080600 hypothetical protein NA 1Chr10:9501678–9504456 (+)8.959e-16
Glyma.10G080700 hypothetical protein NA 1Chr10:9510013–9512097 (+)8.959e-16
Glyma.10G080900 hypothetical protein NA 1Chr10:9552268–9552854 (+)8.959e-16
Glyma.10G081300 hypothetical protein NA 1Chr10:9621308–9625766 (-)6.213e-12
Glyma.10G082100 hypothetical protein AT3G05680:EMB2016:embryo defective 2016 1Chr10:9934486–9960586 (-)7.833e-14
Glyma.10G082200 hypothetical protein NA 1Chr10:9967027–9970045 (-)1.103e-11
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)2.465e-12
Glyma.18G006800 hypothetical protein AT1G67370:ASY1:DNA-binding HORMA family protein 1Chr18:495989–502111 (-)9.647e-12
Glyma.18G247000 hypothetical protein NA 1Chr18:53433846–53444848 (-)1.787e-11
Glyma.18G259000 hypothetical protein NA 1Chr18:54442402–54446789 (-)9.634e-11