Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P27224

Metabolite ID
P27224
Deionized mass
748.2198 Da
Average m/z
749.2298
Average RT
15.1386
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
51
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

51 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.17G217300 hypothetical protein AT2G25170:PKL:chromatin remodeling factor CHD3 (PICKLE) 6Chr17:36638143–36669455 (-)2.873e-11
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)6.938e-13
Glyma.17G217900 hypothetical protein NA 3Chr17:36771760–36778616 (-)1.409e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 2Chr05:32421116–32425198 (-)2.118e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)7.874e-12
Glyma.15G257100 hypothetical protein AT1G56070:LOS1:Ribosomal protein S5/Elongation factor G/III/V family protein 2Chr15:48661607–48665946 (-)2.323e-11
Glyma.17G217200 hypothetical protein AT4G31910:BAT1:HXXXD-type acyl-transferase family protein 2Chr17:36624152–36630712 (-)2.873e-11
Glyma.17G217600 hypothetical protein NA 2Chr17:36695797–36698982 (-)2.873e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)9.55e-11
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)1.754e-11
Glyma.02G113000 hypothetical protein AT1G69370:CM3:chorismate mutase 3 1Chr02:10939096–10941983 (-)7.238e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.626e-12
Glyma.03G244500 hypothetical protein AT3G05090:LRS1:Transducin/WD40 repeat-like superfamily protein 1Chr03:44195906–44205767 (+)2.548e-13
Glyma.03G245100 hypothetical protein AT1G54500:AT1G54500:Rubredoxin-like superfamily protein 1Chr03:44246906–44248269 (-)8.658e-12
Glyma.03G246000 hypothetical protein AT5G28300:AT5G28300:Duplicated homeodomain-like superfamily protein 1Chr03:44312958–44316698 (+)7.784e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)6.653e-12
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)9.57e-11
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)2.494e-11
Glyma.04G190900 hypothetical protein AT5G63160:BT1:BTB and TAZ domain protein 1__AT3G48360:BT2:BTB and TAZ domain protein 2 1Chr04:46152356–46155245 (-)7.039e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)2.827e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.916e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.592e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.592e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)5.573e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.859e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.859e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.859e-11
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)8.672e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.987e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)7.099e-15
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)6.705e-13
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)7.874e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)7.874e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)7.874e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)7.874e-12
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)5.32e-12
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)5.32e-12
Glyma.13G043600 hypothetical protein NA 1Chr13:13695151–13698734 (-)9.895e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)6.649e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)6.649e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)6.649e-11
Glyma.13G169900 hypothetical protein AT3G01470:HB-1:homeobox 1 1Chr13:28397652–28401084 (+)3.802e-11
Glyma.13G170600 ALDH2B6 aldehyde dehydrogenase family 2 member B6 AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 1Chr13:28436396–28440865 (-)9.369e-13
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)8.944e-12
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)8.945e-12
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)1.114e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)6.884e-11
Glyma.17G216500 hypothetical protein AT5G11000:AT5G11000: 1Chr17:36492621–36494615 (+)6.048e-11
Glyma.17G217000 hypothetical protein NA 1Chr17:36553695–36556013 (+)2.873e-11
Glyma.17G217100 hypothetical protein NA 1Chr17:36599289–36605544 (+)2.873e-11
Glyma.17G217800 hypothetical protein NA 1Chr17:36740653–36743352 (-)2.873e-11