Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P27053

Metabolite ID
P27053
Deionized mass
164.0520 Da
Average m/z
165.0595
Average RT
15.0910
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
61
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

61 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.10G081700 hypothetical protein NA 2Chr10:9752508–9758422 (+)6.091e-19
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.492e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.492e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 2Chr18:57674222–57678396 (+)1.221e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.46e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.46e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)9.004e-13
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)2.22e-11
Glyma.03G149000 hypothetical protein AT2G48010:RKF3:receptor-like kinase in in flowers 3 1Chr03:36454104–36456822 (+)5.512e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.982e-11
Glyma.05G145800 hypothetical protein NA 1Chr05:33952829–33960505 (+)8.094e-11
Glyma.05G147700 hypothetical protein NA 1Chr05:34199925–34202541 (+)4.946e-13
Glyma.05G154000 hypothetical protein NA 1Chr05:34732843–34735376 (-)7.219e-12
Glyma.05G169100 hypothetical protein NA 1Chr05:35959241–35961911 (+)1.13e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.962e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.365e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.339e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)8.128e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)2.191e-12
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)4.613e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)6.319e-11
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)4.694e-13
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.657e-15
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.657e-15
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.657e-15
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.657e-15
Glyma.10G080400 hypothetical protein AT2G33990:iqd9:IQ-domain 9 1Chr10:9454616–9455485 (+)2.413e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)4.439e-16
Glyma.10G081300 hypothetical protein NA 1Chr10:9621308–9625766 (-)2.413e-11
Glyma.10G082100 hypothetical protein AT3G05680:EMB2016:embryo defective 2016 1Chr10:9934486–9960586 (-)2.027e-12
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)1.444e-12
Glyma.10G238300 hypothetical protein AT5G07240:IQD24:IQ-domain 24 1Chr10:46688122–46693051 (-)7.494e-11
Glyma.10G238700 hypothetical protein NA 1Chr10:46721439–46725173 (+)7.494e-11
Glyma.10G239000 hypothetical protein NA 1Chr10:46755702–46757579 (-)7.494e-11
Glyma.11G109100 hypothetical protein NA 1Chr11:8322727–8324868 (-)5.53e-12
Glyma.11G109400 hypothetical protein AT4G28510:PHB1:prohibitin 1 1Chr11:8340396–8344235 (-)4.411e-11
Glyma.11G109500 hypothetical protein NA 1Chr11:8345676–8351718 (+)4.411e-11
Glyma.11G109900 hypothetical protein AT4G27630:GTG2:GPCR-type G protein 2 1Chr11:8378708–8386493 (-)2.054e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.384e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.384e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)4.823e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.169e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.169e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)8.8e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)8.8e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.492e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.686e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.123e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)6.67e-14
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)2.563e-15
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)1.767e-12
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)5.802e-14
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)9.306e-13
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)9.14e-13
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)9.212e-13
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)4.76e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)6.298e-12
Glyma.18G298800 hypothetical protein NA 1Chr18:57633577–57639546 (+)3.545e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.848e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.848e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)8.413e-12