Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P26406

Metabolite ID
P26406
Deionized mass
126.1034 Da
Average m/z
127.1108
Average RT
14.9650
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
52
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

52 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)4.717e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)4.717e-12
Glyma.16G135000 hypothetical protein AT3G50910:AT3G50910:netrin receptor DCC 2Chr16:29248080–29253429 (-)8.672e-11
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)9.176e-14
Glyma.03G146300 hypothetical protein AT2G41980:AT2G41980:Protein with RING/U-box and TRAF-like domain 1Chr03:36161959–36166525 (+)2.75e-11
Glyma.03G146400 hypothetical protein AT2G41970:AT2G41970:Protein kinase superfamily protein 1Chr03:36170481–36174029 (+)1.758e-11
Glyma.03G146500 hypothetical protein AT2G41960:AT2G41960:uncharacterized protein 1Chr03:36181312–36189521 (+)1.758e-11
Glyma.03G146600 hypothetical protein AT2G41950:AT2G41950:DNA-directed RNA polymerase subunit beta 1Chr03:36191841–36193872 (-)2.75e-11
Glyma.03G146700 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr03:36196552–36203201 (+)3.154e-11
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)5.271e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)3.165e-11
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)5.733e-13
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)2.944e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)6.273e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)6.273e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.226e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)6.629e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)6.629e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)6.629e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.55e-12
Glyma.06G078400 hypothetical protein AT4G31290:AT4G31290:ChaC-like family protein 1Chr06:6068728–6071360 (+)8.091e-11
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)1.358e-11
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)1.181e-11
Glyma.08G303300 hypothetical protein NA 1Chr08:42134782–42139026 (+)7.338e-11
Glyma.08G303400 hypothetical protein NA 1Chr08:42139097–42147365 (+)7.338e-11
Glyma.08G311500 hypothetical protein NA 1Chr08:43083381–43085732 (+)1.294e-11
Glyma.08G311600 hypothetical protein NA 1Chr08:43086708–43088564 (+)1.367e-12
Glyma.11G179000 hypothetical protein AT2G27230:LHW:transcription factor-like protein 1Chr11:24412040–24417199 (+)1.915e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.982e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.982e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.451e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.451e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.717e-12
Glyma.14G179000 hypothetical protein AT1G12680:PEPKR2:phosphoenolpyruvate carboxylase-related kinase 2 1Chr14:44030814–44034325 (+)2.81e-12
Glyma.14G179200 hypothetical protein AT4G24380:AT4G24380:dihydrofolate reductase 1Chr14:44060802–44063722 (+)2.81e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.02e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.362e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.02e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.02e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)7.197e-11
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)4.85e-14
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)6.099e-14
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)8.927e-12
Glyma.16G144900 hypothetical protein AT2G23540:AT2G23540:GDSL-like Lipase/Acylhydrolase superfamily protein 1Chr16:30549575–30553059 (+)4.138e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)1.168e-13
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)4.003e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)1.168e-13
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)2.196e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)8.508e-13
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)9.176e-14
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)5.525e-14
Glyma.20G114300 hypothetical protein AT3G25840:AT3G25840:Protein kinase superfamily protein 1Chr20:35602598–35610724 (+)2.243e-11