Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P26173

Metabolite ID
P26173
Deionized mass
1008.3418 Da
Average m/z
1009.3457
Average RT
14.8975
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
55
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

55 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)4.486e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 2Chr16:30652378–30659548 (+)4.819e-11
Glyma.01G039700 hypothetical protein AT1G10385:AT1G10385:Vps51/Vps67 family (components of vesicular transport) protein 1Chr01:4304713–4310259 (-)7.368e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.404e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.404e-11
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 1Chr03:2202325–2234931 (+)5.857e-11
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)9.222e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)2.116e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)2.116e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)2.116e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)3.823e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)2.494e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)2.494e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)2.494e-12
Glyma.06G134900 hypothetical protein AT4G27670:HSP21:heat shock protein 21 1Chr06:11083841–11088991 (+)2.142e-11
Glyma.06G135100 hypothetical protein NA 1Chr06:11096995–11099852 (+)9.119e-11
Glyma.06G135300 hypothetical protein NA 1Chr06:11125203–11130757 (-)1.21e-11
Glyma.06G135400 hypothetical protein NA 1Chr06:11125473–11126625 (+)1.21e-11
Glyma.06G147600 BRI1A brassinosteroid receptor AT4G39400:BRI1:Leucine-rich receptor-like protein kinase family protein 1Chr06:12052122–12056526 (-)2.271e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)4.426e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)4.426e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)8.193e-18
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)1.233e-14
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)1.311e-12
Glyma.10G229600 hypothetical protein AT4G23630:BTI1:VIRB2-interacting protein 1 1Chr10:45968793–45973482 (-)1.229e-12
Glyma.10G264300 Mediator of RNA polymerase II transcription subunit 21 AT4G04780:MED21:mediator 21 1Chr10:48858818–48862498 (-)6.671e-11
Glyma.11G094700 hypothetical protein AT5G08280:HEMC:hydroxymethylbilane synthase 1Chr11:7190632–7195838 (-)2.484e-13
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)2.147e-12
Glyma.11G118200 hypothetical protein NA 1Chr11:8979431–8983783 (+)8.267e-13
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)7.255e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)7.255e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)7.255e-12
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 1Chr12:3949453–3957386 (-)1.025e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.276e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.276e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.9e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.9e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)1.348e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.889e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)4.889e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)4.889e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)3.581e-12
Glyma.14G087900 hypothetical protein NA 1Chr14:7887761–7897469 (+)7.079e-11
Glyma.14G190100 hypothetical protein AT2G04280:AT2G04280:calcium ion-binding protein 1Chr14:45502008–45504459 (+)5.949e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.658e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)9.028e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)3.415e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)6.224e-13
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)5.491e-12
Glyma.19G124600 hypothetical protein AT3G10740:ASD1:alpha-L-arabinofuranosidase 1 1Chr19:38280162–38286500 (+)1.023e-11
Glyma.19G124700 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 1Chr19:38288342–38293451 (+)1.023e-11
Glyma.19G126000 CYP98A2 cytochrome P450 98A2 AT2G40890:CYP98A3:cytochrome P450, family 98, subfamily A, polypeptide 3 1Chr19:38430097–38435201 (-)6.722e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)3.925e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)2.909e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)2.262e-12