Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P25954

Metabolite ID
P25954
Deionized mass
350.1137 Da
Average m/z
351.1211
Average RT
14.8209
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
41
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

41 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.15G103700 hypothetical protein NA 4Chr15:8080974–8087923 (-)4.975e-11
Glyma.15G103200 hypothetical protein AT3G06180:AT3G06180:Ribosomal protein L34e superfamily protein 3Chr15:8055881–8062129 (-)4.975e-11
Glyma.10G023700 hypothetical protein NA 2Chr10:2060716–2085426 (-)9.883e-20
Glyma.12G008000 hypothetical protein AT3G52090:NRPB11:DNA-directed RNA polymerase, RBP11-like protein 2Chr12:592967–596657 (+)3.688e-16
Glyma.12G009300 hypothetical protein AT5G13710:SMT1:sterol methyltransferase 1 2Chr12:675878–679976 (+)3.688e-16
Glyma.12G009400 hypothetical protein AT3G59980:AT3G59980:Nucleic acid-binding, OB-fold-like protein 2Chr12:682744–686707 (-)3.688e-16
Glyma.12G023300 hypothetical protein NA 2Chr12:1711347–1715917 (+)3.688e-16
Glyma.12G025600 hypothetical protein AT5G23210:SCPL34:serine carboxypeptidase-like 34 2Chr12:1844961–1853018 (-)3.688e-16
Glyma.15G103000 hypothetical protein NA 2Chr15:8048990–8049723 (+)4.975e-11
Glyma.20G135900 hypothetical protein AT1G23780:AT1G23780:F-box family protein 2Chr20:37557214–37567807 (+)7.546e-11
Glyma.20G138800 hypothetical protein NA 2Chr20:37811695–37815670 (-)7.546e-11
Glyma.02G097300 hypothetical protein AT1G10840:TIF3H1:translation initiation factor 3 subunit H1 1Chr02:8740317–8744368 (+)3.688e-16
Glyma.02G097400 hypothetical protein AT3G28040:AT3G28040:Leucine-rich receptor-like protein kinase family protein 1Chr02:8742027–8748911 (-)3.688e-16
Glyma.10G020600 hypothetical protein AT2G47850:AT2G47850:Zinc finger C-x8-C-x5-C-x3-H type family protein 1Chr10:1782653–1786135 (+)1.292e-12
Glyma.10G021400 hypothetical protein NA 1Chr10:1857313–1860298 (+)1.292e-12
Glyma.10G021900 hypothetical protein AT4G03120:AT4G03120:C2H2 and C2HC zinc fingers superfamily protein 1Chr10:1913824–1918535 (-)1.292e-12
Glyma.10G022000 hypothetical protein AT3G20740:FIE:Transducin/WD40 repeat-like superfamily protein 1Chr10:1919552–1926140 (-)1.292e-12
Glyma.10G022200 hypothetical protein AT4G03110:RBP-DR1:RNA-binding protein-defense related 1 1Chr10:1930320–1935651 (+)1.292e-12
Glyma.12G019500 hypothetical protein AT1G51405:AT1G51405:myosin-like protein 1Chr12:1373656–1376966 (+)3.688e-16
Glyma.12G020400 hypothetical protein AT1G51500:ABCG12:ABC-2 type transporter family protein 1Chr12:1445666–1452363 (-)1.126e-14
Glyma.12G021200 hypothetical protein NA 1Chr12:1524303–1527258 (+)3.688e-16
Glyma.12G021500 hypothetical protein AT1G50450:AT1G50450:Saccharopine dehydrogenase 1Chr12:1547281–1552018 (-)3.688e-16
Glyma.12G023500 hypothetical protein AT4G38810:AT4G38810:Calcium-binding EF-hand family protein 1Chr12:1729351–1733595 (+)3.688e-16
Glyma.12G026400 hypothetical protein AT5G23140:NCLPP7:nuclear-encoded CLP protease P7 1Chr12:1903630–1905558 (+)3.688e-16
Glyma.13G206500 hypothetical protein AT4G04880:AT4G04880:adenosine/AMP deaminase family protein 1Chr13:32017472–32022810 (-)5.565e-11
Glyma.15G102600 hypothetical protein AT2G39590:AT2G39590:40S ribosomal protein S15a 1Chr15:8018666–8022093 (-)4.975e-11
Glyma.15G103300 hypothetical protein AT3G06170:AT3G06170:Serinc-domain containing serine and sphingolipid biosynthesis protein 1Chr15:8066381–8070490 (-)3.688e-16
Glyma.15G103500 hypothetical protein NA 1Chr15:8077952–8078542 (+)4.975e-11
Glyma.15G104300 hypothetical protein AT3G06140:LUL4:RING/U-box superfamily protein 1Chr15:8155486–8159701 (+)4.975e-11
Glyma.15G104400 hypothetical protein AT3G06130:AT3G06130:Heavy metal transport/detoxification superfamily protein 1Chr15:8171016–8173656 (+)4.975e-11
Glyma.17G062700 hypothetical protein AT3G02920:RPA32B:Replication protein A, subunit RPA32 1Chr17:4829089–4834095 (-)3.688e-16
Glyma.19G125600 hypothetical protein AT1G65440:GTB1:global transcription factor group B1 1Chr19:38382184–38391933 (-)3.688e-16
Glyma.19G125800 hypothetical protein AT2G40840:DPE2:disproportionating enzyme 2 1Chr19:38410642–38423531 (+)3.688e-16
Glyma.19G126500 hypothetical protein AT2G40930:UBP5:ubiquitin-specific protease 5 1Chr19:38503103–38515850 (-)3.688e-16
Glyma.19G126600 hypothetical protein NA 1Chr19:38519657–38524877 (-)3.688e-16
Glyma.20G127400 hypothetical protein NA 1Chr20:36939868–36948104 (+)2.23e-14
Glyma.20G136400 hypothetical protein NA 1Chr20:37606446–37607165 (-)7.546e-11
Glyma.20G137700 CRK69 cysteine-rich receptor-like protein kinase NA 1Chr20:37718908–37728897 (-)7.546e-11
Glyma.20G137800 hypothetical protein NA 1Chr20:37733444–37734150 (+)7.546e-11
Glyma.20G139000 hypothetical protein NA 1Chr20:37828387–37833226 (-)7.546e-11
Glyma.20G139100 hypothetical protein NA 1Chr20:37838389–37841836 (-)7.546e-11