Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P25858

Metabolite ID
P25858
Deionized mass
587.1983 Da
Average m/z
588.2038
Average RT
14.7918
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
26
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

26 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)7.008e-11
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)2.21e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)2.21e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)2.21e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)9.617e-12
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)5.282e-12
Glyma.04G082800 hypothetical protein NA 1Chr04:6977997–6983005 (-)1.763e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.79e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)9.29e-12
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)2.755e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)9.372e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)7.008e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)7.008e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)7.008e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)7.008e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.89e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)2.21e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)2.21e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)2.21e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)2.21e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)2.21e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)1.631e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)6.517e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)3.709e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.103e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.103e-11