Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P25842

Metabolite ID
P25842
Deionized mass
491.1097 Da
Average m/z
492.1198
Average RT
14.7860
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
42
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

42 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.05G149900 hypothetical protein NA 2Chr05:34389242–34393621 (-)2.469e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.995e-12
Glyma.16G145100 hypothetical protein NA 2Chr16:30578388–30581421 (-)6.151e-16
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)3.206e-12
Glyma.02G203400 hypothetical protein AT2G24240:AT2G24240:BTB/POZ domain with WD40/YVTN repeat-like protein__AT4G30940:AT4G30940:BTB/POZ domain with WD40/YVT… 1Chr02:38877987–38879327 (-)2.952e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.161e-11
Glyma.03G037300 hypothetical protein NA 1Chr03:4566741–4573890 (+)6.8e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)2.469e-13
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)2.169e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)3.124e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.562e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.036e-11
Glyma.06G147600 BRI1A brassinosteroid receptor AT4G39400:BRI1:Leucine-rich receptor-like protein kinase family protein 1Chr06:12052122–12056526 (-)5.129e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.339e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.062e-11
Glyma.11G161900 hypothetical protein NA 1Chr11:14992307–14994409 (-)9.546e-12
Glyma.11G162500 hypothetical protein AT2G40435:AT2G40435:transcription factor SCREAM-like protein 1Chr11:15087390–15090683 (-)4.775e-11
Glyma.11G163300 WRKY19 WRKY transcription factor 19 NA 1Chr11:15312631–15316628 (+)3.076e-11
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)1.564e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)5.401e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)5.401e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)5.401e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)5.401e-11
Glyma.13G162300 hypothetical protein NA 1Chr13:27773991–27778719 (-)6.119e-11
Glyma.14G044000 hypothetical protein AT5G62290:AT5G62290:nucleotide-sensitive chloride conductance regulator (ICln) family protein 1Chr14:3343611–3346483 (+)5.762e-11
Glyma.14G179900 hypothetical protein NA 1Chr14:44227886–44232217 (-)4.628e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.533e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)4.693e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.533e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.533e-12
Glyma.16G138400 hypothetical protein NA 1Chr16:29560913–29562163 (+)4.175e-11
Glyma.16G141300 hypothetical protein AT4G36710:HAM4:GRAS family transcription factor 1Chr16:29937044–29939337 (+)3.062e-11
Glyma.16G141600 hypothetical protein AT5G66710:AT5G66710:Protein kinase superfamily protein__AT3G50720:AT3G50720:Protein kinase superfamily protein 1Chr16:29970884–29978773 (-)3.063e-11
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)6.877e-14
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)1.347e-12
Glyma.16G144900 hypothetical protein AT2G23540:AT2G23540:GDSL-like Lipase/Acylhydrolase superfamily protein 1Chr16:30549575–30553059 (+)1.726e-14
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)6.954e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)6.151e-16
Glyma.16G145900 hypothetical protein NA 1Chr16:30681265–30689398 (-)3.664e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)3.207e-12
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)5.546e-15
Glyma.18G033800 hypothetical protein NA 1Chr18:2600457–2604130 (+)1.944e-12