Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P25734

Metabolite ID
P25734
Deionized mass
200.0452 Da
Average m/z
201.0523
Average RT
14.7607
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
120
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

120 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 6Chr16:36856833–36863994 (-)1.522e-15
Glyma.16G196900 hypothetical protein NA 4Chr16:35841279–35846894 (-)6.493e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)5.062e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)4.129e-13
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 3Chr16:35831912–35835153 (+)1.171e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)4.362e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)7.296e-14
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)1.689e-14
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)1.168e-15
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.745e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.745e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.012e-14
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.798e-12
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)3.903e-13
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)4.181e-14
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 2Chr16:36871978–36878151 (-)3.824e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.506e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.506e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)1.729e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.289e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.677e-16
Glyma.04G098900 hypothetical protein AT4G09020:ISA3:isoamylase 3 1Chr04:8992275–9013322 (-)1.296e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)8.01e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)9.602e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)1.086e-13
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)4.477e-12
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)4.429e-12
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)4.429e-12
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)4.429e-12
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)4.429e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.576e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.478e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)7.499e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)1.077e-12
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)1.077e-12
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)1.077e-12
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)3.133e-13
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)2.603e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)2.603e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)2.603e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.096e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.096e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)4.168e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)3.131e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)4.168e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)4.168e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)3.131e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)2.794e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)2.891e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)2.891e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)9.373e-13
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)5.716e-11
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)7.973e-13
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)7.973e-13
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)3.454e-11
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)3.454e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)4.882e-11
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)1.536e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.319e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)7.728e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)8.385e-11
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)9.875e-11
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)1.94e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.336e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.336e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.336e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)5.121e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)5.121e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)6.477e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)6.477e-13
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)2.676e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)6.355e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)6.355e-13
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.805e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.168e-15
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)4.985e-14
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)6.958e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)5.062e-13
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)5.692e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.559e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.559e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.745e-13
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)4.931e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)4.931e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)4.931e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)1.756e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)6.01e-14
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)7.155e-12
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)4.91e-13
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)9.702e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)4.645e-11
Glyma.14G190800 hypothetical protein NA 1Chr14:45566998–45568488 (-)4.297e-11
Glyma.14G191000 hypothetical protein AT2G29590:AT2G29590:Thioesterase superfamily protein 1Chr14:45577040–45578743 (-)4.297e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.797e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)8.745e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)8.945e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)8.745e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)8.745e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.171e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.259e-13
Glyma.16G116300 hypothetical protein AT4G35570:HMGB5:high mobility group B5__AT2G17560:HMGB4:high mobility group B4 1Chr16:25905311–25906957 (-)3.104e-14
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)5.741e-13
Glyma.16G117000 hypothetical protein NA 1Chr16:26140411–26140830 (+)7.908e-14
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)1.002e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)3.267e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)5.581e-13
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)8.502e-11
Glyma.16G172600 hypothetical protein AT3G59140:ABCC10:multidrug resistance-associated protein 14 1Chr16:33333664–33344521 (-)5.459e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)3.747e-12
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)3.237e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)2.904e-12
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)9.111e-14
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)8.698e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)8.698e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)5.048e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)6.692e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.109e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.109e-11
Glyma.20G106800 hypothetical protein AT4G38520:AT4G38520:Protein phosphatase 2C family protein__AT3G51370:AT3G51370:Protein phosphatase 2C family protein 1Chr20:34935548–34940516 (-)2.27e-11
Glyma.20G107000 hypothetical protein NA 1Chr20:34968161–34968457 (+)7.472e-11