Overview Annotation GWAS Evidence Associated genes

P25670

Metabolite ID
P25670
Deionized mass
608.2627 Da
Average m/z
609.2703
Average RT
14.7462
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
9
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

9 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.07G054200 hypothetical protein AT2G46570:LAC6:laccase 6 3Chr07:4742597–4747000 (-)1.601e-34
Glyma.07G053300 hypothetical protein AT2G46600:AT2G46600:Calcium-binding EF-hand family protein 2Chr07:4669092–4670444 (-)2.278e-14
Glyma.18G251800 hypothetical protein NA 2Chr18:53831521–53837121 (-)8.831e-11
Glyma.07G053100 hypothetical protein AT4G00900:ECA2:ER-type Ca2+-ATPase 2 1Chr07:4650514–4656868 (-)5.857e-12
Glyma.07G053400 hypothetical protein NA 1Chr07:4677098–4679756 (-)3.248e-11
Glyma.09G166600 hypothetical protein NA 1Chr09:39055156–39061017 (-)3.113e-14
Glyma.10G226500 hypothetical protein NA 1Chr10:45706001–45707052 (-)1.206e-14
Glyma.16G168100 hypothetical protein NA 1Chr16:32801811–32810413 (-)2.701e-16
Glyma.17G086800 hypothetical protein AT5G50130:AT5G50130:NAD(P)-binding Rossmann-fold superfamily protein 1Chr17:6703100–6706716 (+)3.039e-11