Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P25658

Metabolite ID
P25658
Deionized mass
575.2729 Da
Average m/z
576.2773
Average RT
14.7438
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
78
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

78 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.07G095000 hypothetical protein NA 3Chr07:8843665–8855430 (+)4.971e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 3Chr19:1134716–1143232 (+)6.703e-12
Glyma.06G183500 hypothetical protein AT5G50000:AT5G50000:Protein kinase superfamily protein 2Chr06:15828917–15834067 (+)7.403e-12
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 2Chr06:50401945–50408153 (+)2.536e-13
Glyma.07G095400 hypothetical protein NA 2Chr07:8914725–8920132 (+)7.433e-11
Glyma.07G095800 hypothetical protein NA 2Chr07:8969502–8976133 (+)7.433e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)3.842e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)1.329e-16
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.173e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.173e-12
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)5.917e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)3.66e-13
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)7.377e-11
Glyma.03G031700 hypothetical protein AT1G79600:AT1G79600:Protein kinase superfamily protein 1Chr03:3567906–3572939 (-)4.319e-13
Glyma.03G149000 hypothetical protein AT2G48010:RKF3:receptor-like kinase in in flowers 3 1Chr03:36454104–36456822 (+)6.962e-11
Glyma.04G082800 hypothetical protein NA 1Chr04:6977997–6983005 (-)1.111e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)4.175e-11
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)1.808e-12
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)1.139e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)8.041e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.095e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.095e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)7.853e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)8.876e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)8.876e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)8.876e-11
Glyma.05G191600 hypothetical protein AT2G13680:CALS5:callose synthase 5 1Chr05:37711639–37726572 (-)4.912e-15
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.431e-19
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.518e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.412e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.112e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.112e-12
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)9.146e-11
Glyma.06G209300 hypothetical protein NA 1Chr06:20573671–20581076 (-)1.686e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)2.091e-11
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)2.619e-12
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)3.578e-12
Glyma.07G094200 hypothetical protein NA 1Chr07:8792240–8797837 (+)7.891e-11
Glyma.07G095500 hypothetical protein NA 1Chr07:8934807–8940626 (+)7.433e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)5.332e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.034e-16
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)5.619e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)3.039e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)4.563e-11
Glyma.09G019800 VAMP721D vesicle-associated membrane protein 721d NA 1Chr09:1540660–1547761 (+)5.227e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.192e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.607e-12
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)5.575e-13
Glyma.10G038400 hypothetical protein NA 1Chr10:3400759–3409406 (+)3.009e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)4.939e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)4.939e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)4.939e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)4.939e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.472e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)5.004e-13
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)9.974e-13
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)2.853e-13
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.409e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.409e-12
Glyma.12G203300 hypothetical protein AT4G03430:EMB2770:pre-mRNA splicing factor-like protein 1Chr12:36371465–36377700 (-)2.234e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.403e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.329e-16
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)4.907e-14
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)1.415e-12
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)4.669e-16
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)6.188e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)6.188e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.173e-12
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)9.017e-12
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)2.999e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)5.61e-12
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)7.917e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)4.053e-12
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)3.66e-13
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.358e-16
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.358e-16
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)9.413e-11
Glyma.20G222800 hypothetical protein AT3G04760:AT3G04760:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr20:45748122–45750353 (+)1.537e-11