Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P25615

Metabolite ID
P25615
Deionized mass
474.2064 Da
Average m/z
475.2122
Average RT
14.7347
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
45
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

45 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G313500 hypothetical protein NA 3Chr06:50191600–50203098 (-)5.86e-14
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)2.355e-13
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)6.438e-11
Glyma.09G018700 hypothetical protein NA 2Chr09:1470411–1472672 (-)4.102e-13
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)3.316e-11
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)3.286e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)5.764e-14
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)5.724e-12
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)8.112e-11
Glyma.01G234100 hypothetical protein AT5G13270:RARE1:Pentatricopeptide repeat (PPR) superfamily protein 1Chr01:56022128–56026001 (+)1.204e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)8.752e-11
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)3.345e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)5.237e-13
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)1.58e-12
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)2.315e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.186e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)9.578e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.023e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)1.387e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)4.912e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)8.155e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)2.972e-11
Glyma.11G147500 hypothetical protein AT5G60550:GRIK2:geminivirus rep interacting kinase 2__AT3G45240:GRIK1:geminivirus rep interacting kinase 1 1Chr11:11379868–11385928 (-)3.609e-12
Glyma.13G237900 hypothetical protein NA 1Chr13:34809361–34816888 (-)9.55e-13
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)7.7e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)6.471e-13
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)9.563e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.895e-11
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)9.156e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)2.355e-13
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)2.355e-13
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)2.355e-13
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)2.355e-13
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)2.337e-11
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)4.793e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)6.438e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)6.438e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.412e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)6.117e-13
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)6.117e-13
Glyma.18G220900 hypothetical protein AT4G00200:AT4G00200:AT hook motif DNA-binding family protein 1Chr18:50788395–50793758 (-)1.003e-11
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)7.473e-15
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)9.778e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)7.436e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)7.436e-12