Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P25509

Metabolite ID
P25509
Deionized mass
786.2037 Da
Average m/z
787.2111
Average RT
14.7059
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
124
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

124 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)2.658e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)4.897e-14
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)2.439e-11
Glyma.01G166400 hypothetical protein AT4G36080:AT4G36080:phosphotransferases/inositol or phosphatidylinositol kinase 2Chr01:50404781–50436297 (-)3.127e-12
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)3.453e-12
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)3.453e-12
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)3.453e-12
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)2.933e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)2.471e-14
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.384e-15
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.384e-15
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)6.411e-14
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)1.828e-11
Glyma.16G121500 hypothetical protein NA 2Chr16:27007186–27010856 (+)2.31e-12
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 2Chr16:35831912–35835153 (+)1.634e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)2.658e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)6.198e-12
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)7.98e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)2.355e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 1Chr03:1875182–1876855 (+)2.952e-11
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)1.299e-11
Glyma.03G019700 hypothetical protein AT3G61130:GAUT1:galacturonosyltransferase 1 1Chr03:2010835–2018418 (+)8.737e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.086e-13
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.938e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)6.385e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.492e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.68e-13
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)7.467e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)2.557e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)2.557e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)2.557e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)2.51e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)2.261e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)2.261e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)2.261e-12
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)3.471e-11
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)3.471e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)7.742e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)7.742e-12
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)5.065e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)9.013e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)7.188e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)7.189e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)4.549e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)7.254e-12
Glyma.08G182500 hypothetical protein NA 1Chr08:14639429–14643788 (+)4.059e-11
Glyma.08G239500 hypothetical protein AT4G09180:FBH2:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:20444715–20447665 (-)8.774e-13
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)1.554e-12
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)1.554e-12
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)8.058e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)7.394e-15
Glyma.09G269100 hypothetical protein NA 1Chr09:48651429–48653656 (-)8.537e-13
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)3.157e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)2.462e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)7.951e-12
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)3.453e-12
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)3.453e-12
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)3.453e-12
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)3.179e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)3.453e-12
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)3.453e-12
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)4.514e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)1.274e-11
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)1.588e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.676e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.676e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.676e-11
Glyma.11G183800 hypothetical protein AT5G22450:AT5G22450:spectrin beta chain, brain 1Chr11:25162867–25173439 (-)2.08e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)7.804e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)7.806e-11
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)2.096e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)8.94e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)8.94e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)3.26e-12
Glyma.12G203300 hypothetical protein AT4G03430:EMB2770:pre-mRNA splicing factor-like protein 1Chr12:36371465–36377700 (-)9.658e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.804e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.104e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.104e-11
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)1.152e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)4.897e-14
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)1.83e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.012e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.012e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.384e-15
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)3.101e-11
Glyma.14G149700 hypothetical protein AT1G77590:LACS9:long chain acyl-CoA synthetase 9 1Chr14:32271989–32301104 (+)8.523e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)2.778e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)2.778e-11
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)6.662e-13
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)3.485e-14
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)3.485e-14
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.845e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)4.815e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.845e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.845e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.208e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.776e-14
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)6.422e-12
Glyma.16G066000 hypothetical protein AT5G40660:AT5G40660:ATP12 protein-like protein 1Chr16:6570689–6574950 (+)6.44e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)1.623e-11
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)1.876e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)2.439e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)2.439e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.088e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)8.961e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)1.028e-13
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)1.463e-11
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)3.646e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)6.13e-19
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)2.502e-11
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)2.502e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)1.151e-14
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.237e-12
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)5.771e-12
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)8.984e-13
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)4.244e-11
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)4.164e-12
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)4.165e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)7.124e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)7.124e-12
Glyma.19G031200 hypothetical protein NA 1Chr19:3870532–3874170 (-)2.23e-11
Glyma.19G032500 hypothetical protein NA 1Chr19:4140729–4141955 (-)2.325e-11
Glyma.19G032800 hypothetical protein NA 1Chr19:4196959–4199265 (-)5.44e-13
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.182e-12