Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P25481

Metabolite ID
P25481
Deionized mass
510.2748 Da
Average m/z
511.2838
Average RT
14.6979
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
70
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

70 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 3Chr20:34984922–34988496 (+)2.699e-13
Glyma.09G058900 hypothetical protein NA 2Chr09:5397968–5404650 (-)6.111e-12
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)5.259e-12
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)5.259e-12
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)5.259e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.254e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.254e-11
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)1.302e-13
Glyma.20G112600 hypothetical protein AT5G04310:AT5G04310:Pectin lyase-like superfamily protein 2Chr20:35468911–35474203 (+)1.577e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.2e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.2e-11
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)5.758e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)6.844e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.419e-11
Glyma.05G214300 hypothetical protein NA 1Chr05:39541210–39545461 (+)4.178e-12
Glyma.05G214600 hypothetical protein NA 1Chr05:39562982–39567736 (-)4.178e-12
Glyma.05G215300 hypothetical protein AT4G11090:TBL23:TRICHOME BIREFRINGENCE-LIKE 23 1Chr05:39604053–39607999 (+)9.224e-11
Glyma.05G215400 hypothetical protein AT4G23790:TBL24:TRICHOME BIREFRINGENCE-LIKE 24 1Chr05:39608834–39613293 (+)4.178e-12
Glyma.05G215900 hypothetical protein NA 1Chr05:39636109–39638136 (-)9.224e-11
Glyma.05G217100 hypothetical protein AT1G64440:RHD1:NAD(P)-binding Rossmann-fold superfamily protein 1Chr05:39735139–39739763 (+)8.132e-11
Glyma.05G222500 hypothetical protein AT2G19600:KEA4:K+ efflux antiporter 4 1Chr05:40179950–40188580 (+)5.77e-12
Glyma.05G222900 hypothetical protein AT4G29490:AT4G29490:Metallopeptidase M24 family protein 1Chr05:40226295–40233649 (-)1.831e-12
Glyma.05G223100 hypothetical protein AT2G19680:AT2G19680:Mitochondrial ATP synthase subunit G protein 1Chr05:40259388–40262641 (+)8.471e-12
Glyma.05G224200 hypothetical protein NA 1Chr05:40307329–40312025 (+)7.211e-17
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)6.433e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.48e-12
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)9.569e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)6.12e-13
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)1.926e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)5.513e-11
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)3.377e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.588e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)8.728e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)7.416e-12
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)9.877e-12
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)5.259e-12
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)5.259e-12
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)5.259e-12
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)5.259e-12
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)5.259e-12
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)1.435e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)1.825e-13
Glyma.12G028800 hypothetical protein AT1G50300:TAF15:TBP-associated factor 15 1Chr12:2148313–2153234 (-)3.051e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)8.924e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)8.923e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)3.341e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)3.341e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)8.453e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)8.453e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.254e-11
Glyma.13G184500 hypothetical protein NA 1Chr13:29829471–29834027 (+)1.869e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)6.518e-11
Glyma.14G082300 hypothetical protein AT5G42750:BKI1:BRI1 kinase inhibitor 1 1Chr14:7130733–7132305 (+)5.817e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.297e-11
Glyma.16G189500 hypothetical protein NA 1Chr16:35202920–35206459 (-)9.854e-11
Glyma.16G198600 hypothetical protein AT5G52060:BAG1:BCL-2-associated athano 1 1Chr16:35958085–35960833 (+)3.206e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)3.338e-11
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)6.154e-13
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.611e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.612e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)9.956e-11
Glyma.20G098100 hypothetical protein AT1G56420:AT1G56420:antigenic heat-stable protein 1Chr20:34134555–34139100 (-)3.894e-14
Glyma.20G098200 hypothetical protein AT1G56345:AT1G56345:Pseudouridine synthase family protein 1Chr20:34140611–34141832 (+)2.079e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)7.427e-12
Glyma.20G099200 hypothetical protein AT3G55410:AT3G55410:2-oxoglutarate dehydrogenase, E1 component__AT5G65750:AT5G65750:2-oxoglutarate dehydrogenase, E1 co… 1Chr20:34242852–34248956 (-)3.189e-13
Glyma.20G107900 hypothetical protein NA 1Chr20:35044042–35046452 (-)3.182e-12
Glyma.20G108000 hypothetical protein NA 1Chr20:35047833–35051623 (-)2.626e-12
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)5.802e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)4.267e-16
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)8.948e-12