Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P25458

Metabolite ID
P25458
Deionized mass
202.0485 Da
Average m/z
203.0557
Average RT
14.6928
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
47
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

47 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G123500 hypothetical protein NA 3Chr08:9494946–9505931 (-)6.985e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)1.045e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.321e-13
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.321e-13
Glyma.01G175500 hypothetical protein AT3G50660:DWF4:Cytochrome P450 superfamily protein 1Chr01:51219681–51224948 (+)9.987e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.855e-12
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)7.927e-11
Glyma.05G147900 hypothetical protein AT1G27340:LCR:Galactose oxidase/kelch repeat superfamily protein 1Chr05:34213379–34217429 (+)2.599e-11
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)1.715e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)2.988e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)4.985e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.933e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)2.465e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)7.552e-14
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)6.986e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)6.986e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)6.986e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)6.986e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)1.356e-13
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)2.771e-12
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)2.771e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.195e-11
Glyma.09G057400 hypothetical protein AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein 1Chr09:5173554–5193820 (-)3.961e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)8.265e-13
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)2.933e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.009e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.625e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.625e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)9.405e-12
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)9.405e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)9.405e-12
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)9.584e-12
Glyma.13G180300 hypothetical protein NA 1Chr13:29378090–29379784 (-)4.856e-12
Glyma.13G184500 hypothetical protein NA 1Chr13:29829471–29834027 (+)8.136e-12
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)2.663e-14
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)1.666e-12
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)1.666e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)2.456e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)1.921e-13
Glyma.16G189000 hypothetical protein NA 1Chr16:35160485–35167548 (-)4.387e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.107e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)2.214e-11
Glyma.18G079000 hypothetical protein NA 1Chr18:7595306–7600287 (-)5.301e-11
Glyma.18G219900 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr18:50676002–50680129 (+)5.217e-11
Glyma.18G238000 hypothetical protein AT1G01490:AT1G01490:Heavy metal transport/detoxification superfamily protein 1Chr18:52679724–52682816 (+)4.717e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)6.197e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)6.027e-13