Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P25425

Metabolite ID
P25425
Deionized mass
265.1638 Da
Average m/z
266.1727
Average RT
14.6858
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
61
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

61 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)5.273e-15
Glyma.18G195500 hypothetical protein NA 3Chr18:46967195–46981775 (+)4.971e-11
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 2Chr03:2007617–2009871 (+)9.409e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)4.761e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)5.26e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.514e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.514e-11
Glyma.16G138800 hypothetical protein NA 2Chr16:29609432–29615000 (+)2.258e-12
Glyma.16G144200 hypothetical protein AT3G50380:AT3G50380:vacuolar protein sorting-associated protein, putative (DUF1162) 2Chr16:30434508–30475458 (-)3.234e-12
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 2Chr16:30514629–30519598 (+)6.429e-15
Glyma.16G145100 hypothetical protein NA 2Chr16:30578388–30581421 (-)2.732e-17
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)8.139e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)5.12e-13
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)6.738e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)8.473e-11
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)2.862e-11
Glyma.06G078400 hypothetical protein AT4G31290:AT4G31290:ChaC-like family protein 1Chr06:6068728–6071360 (+)1.767e-12
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)1.707e-13
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)4.973e-11
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)1.332e-12
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)1.331e-12
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)9.693e-11
Glyma.09G209900 hypothetical protein AT1G31930:XLG3:extra-large GTP-binding protein 3 1Chr09:43412726–43419532 (+)2.207e-11
Glyma.09G210700 hypothetical protein AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 1Chr09:43466944–43471858 (-)5.296e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.947e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)4.592e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)4.592e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.862e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.32e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.32e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)1.929e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.633e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.633e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.514e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)7.168e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.169e-15
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.269e-15
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.169e-15
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.169e-15
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)6.568e-11
Glyma.16G141300 hypothetical protein AT4G36710:HAM4:GRAS family transcription factor 1Chr16:29937044–29939337 (+)1.007e-11
Glyma.16G141600 hypothetical protein AT5G66710:AT5G66710:Protein kinase superfamily protein__AT3G50720:AT3G50720:Protein kinase superfamily protein 1Chr16:29970884–29978773 (-)1.007e-11
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)7.972e-17
Glyma.16G144300 hypothetical protein NA 1Chr16:30443185–30446450 (+)3.234e-12
Glyma.16G144900 hypothetical protein AT2G23540:AT2G23540:GDSL-like Lipase/Acylhydrolase superfamily protein 1Chr16:30549575–30553059 (+)6.375e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)2.732e-17
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)5.543e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)5.543e-11
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)2.123e-16
Glyma.16G147400 hypothetical protein NA 1Chr16:30817535–30821568 (+)4.514e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)8.931e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)8.931e-12
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)3.538e-11
Glyma.18G195900 accA-2 AT2G38040:CAC3:acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit 1Chr18:47054765–47060075 (+)4.971e-11
Glyma.18G251000 hypothetical protein NA 1Chr18:53738009–53740714 (+)4.517e-13
Glyma.18G251400 hypothetical protein NA 1Chr18:53754942–53759244 (-)7.163e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)7.434e-14
Glyma.18G252100 hypothetical protein AT1G02090:FUS5:Proteasome component (PCI) domain protein 1Chr18:53885762–53894767 (+)3.017e-11
Glyma.18G266200 hypothetical protein NA 1Chr18:55065716–55066843 (-)9.825e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.396e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.396e-11