Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P25364

Metabolite ID
P25364
Deionized mass
370.1228 Da
Average m/z
371.1304
Average RT
14.6791
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
53
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

53 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G036200 hypothetical protein AT1G10510:emb2004:RNI-like superfamily protein 3Chr01:3791180–3811591 (-)5.582e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)3.498e-16
Glyma.19G005300 hypothetical protein NA 2Chr19:483800–486940 (+)8.642e-13
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)2.926e-12
Glyma.01G036500 hypothetical protein AT1G59980:ARL2:ARG1-like 2__AT1G24120:ARL1:ARG1-like 1 1Chr01:3821377–3825854 (-)5.582e-12
Glyma.01G037200 hypothetical protein NA 1Chr01:3946315–3948100 (-)3.409e-12
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)1.442e-12
Glyma.01G174300 hypothetical protein NA 1Chr01:51115502–51120201 (+)1.364e-11
Glyma.01G174600 hypothetical protein AT5G66740:AT5G66740:spindle assembly abnormal protein (DUF620) 1Chr01:51138854–51141103 (+)1.364e-11
Glyma.01G176400 hypothetical protein AT1G63810:AT1G63810:nucleolar protein 1Chr01:51285599–51295173 (-)5.492e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)4.572e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.175e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.266e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.264e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.521e-11
Glyma.08G123500 hypothetical protein NA 1Chr08:9494946–9505931 (-)1.145e-11
Glyma.08G191900 hypothetical protein AT3G13784:CWINV5:cell wall invertase 5 1Chr08:15431365–15437778 (-)3.121e-12
Glyma.08G192000 hypothetical protein AT3G13790:ATBFRUCT1:Glycosyl hydrolases family 32 protein 1Chr08:15440745–15445678 (-)3.121e-12
Glyma.09G012200 hypothetical protein AT2G35760:AT2G35760:Uncharacterized protein family (UPF0497) 1Chr09:937048–940244 (+)5.767e-12
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)2.131e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)3.818e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)6.99e-15
Glyma.09G269100 hypothetical protein NA 1Chr09:48651429–48653656 (-)2.861e-17
Glyma.09G270000 hypothetical protein AT3G54220:SCR:GRAS family transcription factor 1Chr09:48704737–48708820 (-)1.383e-11
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)1.362e-13
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)2.045e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)2.083e-11
Glyma.13G044300 hypothetical protein NA 1Chr13:13774555–13779250 (-)1.472e-12
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)3.641e-14
Glyma.13G049200 hypothetical protein AT3G02440:TBL20:TRICHOME BIREFRINGENCE-LIKE 20 1Chr13:14515169–14519326 (-)2.255e-12
Glyma.13G049400 hypothetical protein AT2G20000:HBT:CDC27 family protein 1Chr13:14530308–14541307 (-)2.255e-12
Glyma.13G052800 hypothetical protein NA 1Chr13:15005141–15009623 (+)1.44e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.286e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)1.286e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)1.286e-11
Glyma.13G319600 hypothetical protein AT5G22740:CSLA02:cellulose synthase-like A02 1Chr13:41398196–41403950 (-)3.903e-12
Glyma.13G319700 hypothetical protein NA 1Chr13:41414504–41418957 (+)4.02e-12
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)2.072e-12
Glyma.16G114900 hypothetical protein NA 1Chr16:25456379–25485759 (+)6.361e-11
Glyma.16G115800 hypothetical protein NA 1Chr16:25719040–25728740 (-)1.928e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)1.446e-15
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)8.927e-13
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)4.571e-13
Glyma.16G138900 hypothetical protein NA 1Chr16:29620531–29621995 (+)9.517e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)4.464e-11
Glyma.16G140000 hypothetical protein AT5G01820:SR1:serine/threonine protein kinase 1 1Chr16:29738375–29739010 (+)3.995e-12
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)1.956e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)2.978e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)2.074e-11
Glyma.20G018000 hypothetical protein AT1G70820:AT1G70820:phosphoglucomutase, putative / glucose phosphomutase 1Chr20:1840259–1844405 (-)8.281e-11
Glyma.20G099200 hypothetical protein AT3G55410:AT3G55410:2-oxoglutarate dehydrogenase, E1 component__AT5G65750:AT5G65750:2-oxoglutarate dehydrogenase, E1 co… 1Chr20:34242852–34248956 (-)2.172e-13
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)1.104e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)4.973e-12