Overview Annotation GWAS Evidence Associated genes

P25352

Metabolite ID
P25352
Deionized mass
605.2684 Da
Average m/z
606.2750
Average RT
14.6775
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
17
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

17 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.528e-11
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)5.39e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)2.832e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)9.389e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.172e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.557e-13
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)1.279e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.716e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.716e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.716e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.716e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)5.613e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.504e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.334e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)7.161e-13
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)3.038e-11
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)2.447e-11