Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P25279

Metabolite ID
P25279
Deionized mass
323.6291 Da
Average m/z
324.6368
Average RT
14.6655
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
103
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

103 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)4.949e-15
Glyma.06G313500 hypothetical protein NA 3Chr06:50191600–50203098 (-)1.57e-13
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 2Chr02:7553127–7557516 (-)1.575e-18
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)8.468e-15
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)8.468e-15
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)5.992e-17
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)5.127e-14
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)8.338e-14
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)9.565e-13
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)2.729e-12
Glyma.01G168800 hypothetical protein AT1G24430:AT1G24430:HXXXD-type acyl-transferase family protein 1Chr01:50633986–50636589 (+)1.81e-11
Glyma.01G175700 hypothetical protein NA 1Chr01:51244446–51248246 (+)7.093e-11
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)2.972e-12
Glyma.02G293100 hypothetical protein AT3G20800:AT3G20800:Cell differentiation, Rcd1-like protein 1Chr02:47183443–47188007 (-)5.118e-13
Glyma.02G294200 hypothetical protein AT3G20290:EHD1:EPS15 homology domain 1 1Chr02:47256480–47263517 (+)3.801e-11
Glyma.02G294900 hypothetical protein AT5G55220:AT5G55220:trigger factor type chaperone family protein 1Chr02:47300149–47306133 (+)2.782e-11
Glyma.02G295000 hypothetical protein AT4G26770:AT4G26770:Phosphatidate cytidylyltransferase family protein 1Chr02:47306160–47312036 (-)2.782e-11
Glyma.02G295900 hypothetical protein NA 1Chr02:47375932–47378006 (+)8.477e-11
Glyma.02G296200 hypothetical protein AT5G55390:EDM2:ENHANCED DOWNY MILDEW 2 1Chr02:47383044–47395946 (-)8.477e-11
Glyma.02G296300 hypothetical protein AT5G55400:AT5G55400:Actin binding Calponin homology (CH) domain-containing protein 1Chr02:47399263–47406220 (-)1.899e-12
Glyma.02G303600 hypothetical protein NA 1Chr02:47883626–47887124 (-)8.042e-13
Glyma.02G303700 hypothetical protein NA 1Chr02:47892900–47896207 (+)8.042e-13
Glyma.02G304000 hypothetical protein AT1G51350:AT1G51350:ARM repeat superfamily protein 1Chr02:47908136–47915999 (-)8.042e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.023e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)6.62e-13
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)4.336e-11
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)5.899e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)4.717e-12
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)1.574e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.811e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)3.529e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)3.529e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.532e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)5.273e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)5.273e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)5.273e-12
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)1.381e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.376e-11
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)2.546e-12
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)8.234e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)4.949e-15
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)4.949e-15
Glyma.08G099800 hypothetical protein NA 1Chr08:7636648–7639681 (+)7.504e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)8.468e-15
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)8.468e-15
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)8.468e-15
Glyma.08G150700 hypothetical protein AT2G44500:AT2G44500:O-fucosyltransferase family protein 1Chr08:11603469–11607610 (+)8.136e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.132e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.4e-11
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)9.48e-12
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)4.465e-12
Glyma.09G252300 hypothetical protein AT5G16520:AT5G16520:uncharacterized protein 1Chr09:47254519–47261787 (-)2.531e-11
Glyma.09G252400 hypothetical protein NA 1Chr09:47260143–47260334 (+)2.531e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)1.062e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)1.062e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)7.216e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)7.216e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)7.216e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)7.216e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)3.634e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.741e-12
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)5.475e-12
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)2.839e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)9.512e-15
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)6.76e-14
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)6.76e-14
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)6.76e-14
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)6.76e-14
Glyma.11G118200 hypothetical protein NA 1Chr11:8979431–8983783 (+)9.598e-12
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)2.536e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.643e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.643e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.98e-14
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.979e-14
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)3.932e-12
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)6.473e-13
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)7.761e-16
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)1.585e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.226e-12
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)4.48e-11
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)4.48e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)2.632e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)5.127e-14
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)8.338e-14
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.621e-17
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.946e-12
Glyma.16G207700 hypothetical protein AT4G15093:LigB:catalytic LigB subunit of aromatic ring-opening dioxygenase family 1Chr16:36739878–36743378 (-)2.319e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)1.083e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)6.315e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)6.315e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.869e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.869e-12
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)1.082e-11
Glyma.18G044100 hypothetical protein NA 1Chr18:3809348–3812858 (-)1.232e-11
Glyma.18G044200 hypothetical protein AT5G17300:RVE1:Homeodomain-like superfamily protein 1Chr18:3813589–3817289 (-)1.232e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)6.638e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)6.638e-13
Glyma.19G119100 hypothetical protein AT3G03650:EDA5:Exostosin family protein 1Chr19:37668759–37672434 (+)3.123e-12
Glyma.19G119200 hypothetical protein AT3G03630:CS26:cysteine synthase 26 1Chr19:37677773–37683394 (+)3.3e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)6.397e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)9.684e-13
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)9.195e-11
Glyma.20G179000 hypothetical protein NA 1Chr20:41630613–41632249 (-)2.388e-13