Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P25162

Metabolite ID
P25162
Deionized mass
462.1134 Da
Average m/z
463.1221
Average RT
14.6315
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
23
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

23 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G004600 hypothetical protein NA 1Chr01:438340–439522 (-)6.191e-12
Glyma.01G004700 Meiotic nuclear division protein 1 homolog AT4G29170:ATMND1:Mnd1 family protein 1Chr01:441820–445055 (-)6.191e-12
Glyma.03G033800 EXPB3 AT1G65680:EXPB2:expansin B2 1Chr03:3927353–3930165 (-)7.473e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)4.561e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.402e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.402e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.03e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.09e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.09e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.09e-12
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)4.922e-14
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)1.42e-12
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)1.065e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)1.703e-12
Glyma.06G184100 hypothetical protein NA 1Chr06:15897746–15902462 (+)5.739e-11
Glyma.06G286100 hypothetical protein AT1G23280:AT1G23280:MAK16 protein-like protein 1Chr06:47455227–47461077 (+)1.158e-11
Glyma.06G286400 hypothetical protein NA 1Chr06:47479202–47486309 (+)1.158e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)2.865e-12
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)2.865e-12
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)3.943e-13
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)7.679e-11
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)3.253e-14
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)6.646e-11